LOCUS AEE85867.1 1883 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DDB1-CUL4 associated factor 1 protein.
ACCESSION CP002687-5668
PROTEIN_ID AEE85867.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="DCAF1"
/locus_tag="AT4G31160"
/gene_synonym="DDB1-CUL4 associated factor 1"
/gene_synonym="F6E21.80"
/gene_synonym="F6E21_80"
/inference="Similar to RNA sequence,
EST:INSD:EG502916.1,INSD:EH991120.1,INSD:EL979136.1,
INSD:BP825641.1,INSD:EL204821.1,INSD:AU230589.1,
INSD:AV524357.1,INSD:AV530265.1,INSD:ES110119.1,
INSD:AV547968.1,INSD:AV547392.1,INSD:AV547094.1,
INSD:EL075373.1,INSD:AV546249.1,INSD:EL111233.1,
INSD:EL977660.1,INSD:AV547717.1,INSD:AV554973.1,
INSD:EG502914.1,INSD:EG502915.1,INSD:EL094894.1,
INSD:AU239297.1,INSD:ES215849.1"
/inference="Similar to RNA sequence, mRNA:INSD:AK118434.1"
/note="DDB1-CUL4 associated factor 1 (DCAF1); FUNCTIONS
IN: nucleotide binding; INVOLVED IN: in 6 processes;
LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex;
EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: WD40
repeat-like-containing domain (InterPro:IPR011046), LisH
dimerisation motif, subgroup (InterPro:IPR013720),
WD40-repeat-containing domain (InterPro:IPR017986), WD40
repeat (InterPro:IPR001680), WD40/YVTN
repeat-like-containing domain (InterPro:IPR015943), LisH
dimerisation motif (InterPro:IPR006594); Has 5754 Blast
hits to 3482 proteins in 410 species: Archae - 46;
Bacteria - 1277; Metazoa - 1225; Fungi - 769; Plants -
278; Viruses - 87; Other Eukaryotes - 2072 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G31160"
/db_xref="Araport:AT4G31160"
intron_pos 86:2 (1/12)
intron_pos 112:0 (2/12)
intron_pos 151:0 (3/12)
intron_pos 204:2 (4/12)
intron_pos 450:0 (5/12)
intron_pos 479:2 (6/12)
intron_pos 611:0 (7/12)
intron_pos 801:0 (8/12)
intron_pos 862:0 (9/12)
intron_pos 1013:0 (10/12)
intron_pos 1050:0 (11/12)
intron_pos 1650:0 (12/12)
BEGIN
1 MDGQEHAEVP NSMVEDDQSV VAAEAIAELA NSTGEPNPEE GEEQSVEDEL IAKAQKLMED
61 ITSVANNPNP NILHALSQLL ESQESLFLEE NGHFSNARGS HNSGKLCILI RENDEFFELI
121 SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA
181 KKEASDFEML KTYSTGLLAL SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT
241 TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV
301 SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR
361 DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC IIGTKNITDL VKRAVGAAET
421 EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN
481 PTCVTSDQTT DVSEVSLPDI ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL
541 LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS
601 SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL
661 DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE KQMAFHTCFA LRQYFRAHLL
721 LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW
781 PAVNNFLASS GHVTMLELCQ TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN
841 RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR
901 PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR
961 GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR DDTIAQILTK LEVGKSLSEL
1021 IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA
1081 ATPITYDSKE LLLLIHEHLQ ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP
1141 LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW
1201 PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ
1261 STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP ISFPRKRKLS ELRDSSVPGK
1321 RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL
1381 DSLVVQYLKH QHRQCLAPIT TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS
1441 GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM
1501 LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS
1561 GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN PYSLVHFSPC DTLILWNGVL
1621 WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS
1681 RGDVIYAMLR RNIEDVMSAV HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP
1741 TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL
1801 GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD
1861 DGEMQDFMSS GEEDDYRDNI RSS
//