LOCUS AEE85867.1 1883 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana DDB1-CUL4 associated factor 1 protein. ACCESSION CP002687-5668 PROTEIN_ID AEE85867.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="DCAF1" /locus_tag="AT4G31160" /gene_synonym="DDB1-CUL4 associated factor 1" /gene_synonym="F6E21.80" /gene_synonym="F6E21_80" /inference="Similar to RNA sequence, EST:INSD:EG502916.1,INSD:EH991120.1,INSD:EL979136.1, INSD:BP825641.1,INSD:EL204821.1,INSD:AU230589.1, INSD:AV524357.1,INSD:AV530265.1,INSD:ES110119.1, INSD:AV547968.1,INSD:AV547392.1,INSD:AV547094.1, INSD:EL075373.1,INSD:AV546249.1,INSD:EL111233.1, INSD:EL977660.1,INSD:AV547717.1,INSD:AV554973.1, INSD:EG502914.1,INSD:EG502915.1,INSD:EL094894.1, INSD:AU239297.1,INSD:ES215849.1" /inference="Similar to RNA sequence, mRNA:INSD:AK118434.1" /note="DDB1-CUL4 associated factor 1 (DCAF1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), LisH dimerisation motif, subgroup (InterPro:IPR013720), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594); Has 5754 Blast hits to 3482 proteins in 410 species: Archae - 46; Bacteria - 1277; Metazoa - 1225; Fungi - 769; Plants - 278; Viruses - 87; Other Eukaryotes - 2072 (source: NCBI BLink)." /db_xref="TAIR:AT4G31160" /db_xref="Araport:AT4G31160" intron_pos 86:2 (1/12) intron_pos 112:0 (2/12) intron_pos 151:0 (3/12) intron_pos 204:2 (4/12) intron_pos 450:0 (5/12) intron_pos 479:2 (6/12) intron_pos 611:0 (7/12) intron_pos 801:0 (8/12) intron_pos 862:0 (9/12) intron_pos 1013:0 (10/12) intron_pos 1050:0 (11/12) intron_pos 1650:0 (12/12) BEGIN 1 MDGQEHAEVP NSMVEDDQSV VAAEAIAELA NSTGEPNPEE GEEQSVEDEL IAKAQKLMED 61 ITSVANNPNP NILHALSQLL ESQESLFLEE NGHFSNARGS HNSGKLCILI RENDEFFELI 121 SSTFLSENSY STAVKAASAR LLMNCSLTWM YPHVFDDAVT ENFKNWVMEE AVKFPGEDSA 181 KKEASDFEML KTYSTGLLAL SLASRGQIVE DVLTSGLSAK LMHYLRVRVL KEPSTSRIHT 241 TETKHVSLKT KEEGRSRVRK IVDTVEGDHV LETDSGREMG QTDVQPDGEF EIDGRDVFNV 301 SGVVDCKIKP GDDNSVRDDP SRHRLNRSKS RGRGRVHEGA PDTEVLLASP RLGRLLVRDR 361 DLSKISDGRN AEDVTVCLGK MKSGIMEIER EDNDECFQGC IIGTKNITDL VKRAVGAAET 421 EARAAHAPDD AAKAAGDAAA ELVKTAALEE FKSSGSEEAA VSAATRAAIT VIDAAEVSRN 481 PTCVTSDQTT DVSEVSLPDI ESLAQLQEKY CIQCLEILGE YVEVLGPVLH EKGVDVCIVL 541 LERTSQLDDR STVSPLLPDV MKLICALAAH RKFAAMFVER RGILKLLAVP RVSETFYGLS 601 SCLYTIGSLQ GIMERVCALP LVVIHQVVKL AIELLDCSQD QARKNSALFF AAAFVFRAIL 661 DAFDAQDSLQ KLLAILKDAA SVRTGANTDR SAPEVMTSSE KQMAFHTCFA LRQYFRAHLL 721 LLVDSIRPSR ISRGGVPSSM KPNIRAAYKP LDISNEAVDA IFLQLQKDRR LGPTFVKAQW 781 PAVNNFLASS GHVTMLELCQ TPPVDRYLHD LLQYAFGVLH IVTSIPDGRK AIAHATLSNN 841 RAGIAVILDA ANISNSIVDP EIIQPALNVL INLVCPPPSL SNKPPLAQNH QPVPGQATTR 901 PSTDVAVGTQ STGNAPQTPV APASSGLVGD RRIFLGAGTG SAGLAAKLEQ VYRQAREAVR 961 GNDGIKILLK LLQPRIYVNP PATPDCLRAL ACRVLLGLAR DDTIAQILTK LEVGKSLSEL 1021 IRDSGGQSSG TDQGRWQAEL AQVALELIGI VTNSGHATTL TASDAATPTL RRIERAAIAA 1081 ATPITYDSKE LLLLIHEHLQ ASGLGDTASA LLKEAQLTPL PSSASPSSIA YSTTQEMSTP 1141 LAQEQWPSGR ANSGFFTSKP KVCAHDEDPN SRSNAALSAK KKHLASSTLE MPTPVAQQQW 1201 PSGRANCGFC PSIPKINARD EDPSSRGNAA PSAKKKQLTF SPSFSSQSRK QSFSHDALPQ 1261 STQRINCCSN SDPALADTSE TAAELVLKND LDADAQFKTP ISFPRKRKLS ELRDSSVPGK 1321 RIDLGERRNS TFADGSGLQT PASALDANQS GSSRLGQMTP ASQLRLPSDP QPSNPERLSL 1381 DSLVVQYLKH QHRQCLAPIT TLPPVSLLHP HVCPEPKRLL EAPLNMTGRL GTRELQSFYS 1441 GVHGNRRDRQ FVFSRFKSWR SFRDETALFT CIALLGGTNH IAVGSHAGEI KIFEASSGSM 1501 LESVSGHQAP VTLVQPYVSR DTQLLLSSSS SDVQLWDASS ITGGPRHSFD GCKAAKFSNS 1561 GLQFAALSCE ASRKDVLLYD VQTCSPCQKL TDTVTSSRSN PYSLVHFSPC DTLILWNGVL 1621 WDRRIPEKVR RFDQFTDYGG GGFHPSRNEV IINSEIWDMR TFKLLRSVPS LDQTAITFNS 1681 RGDVIYAMLR RNIEDVMSAV HTRRVKHPLF AAFRTLDAIN YSDIATIPVD RCLLDFATEP 1741 TDSFLGLITM EDQEDMFSSA RMYEIGRRRP TDDDSDPDDD DETEDEDEDD EEEDDLDRIL 1801 GLAGDNSDSG DDDLSSEDNE DSVSDFDEEA DILIDGDFME ELIEGENEDD GNGEDEDDDD 1861 DGEMQDFMSS GEEDDYRDNI RSS //