LOCUS AEE85683.1 321 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Transducin/WD40 repeat-like superfamily
protein protein.
ACCESSION CP002687-5413
PROTEIN_ID AEE85683.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="VIP3"
/locus_tag="AT4G29830"
/gene_synonym="A. thaliana homolog of yeast SKI8"
/gene_synonym="F27B13.70"
/gene_synonym="F27B13_70"
/gene_synonym="SKI8"
/gene_synonym="vernalization independence 3"
/inference="Similar to RNA sequence,
EST:INSD:ES199848.1,INSD:BP593297.1,INSD:ES192431.1,
INSD:ES190566.1,INSD:BP617374.1,INSD:AV784250.1,
INSD:BP864602.1,INSD:EL319815.1,INSD:BU635209.1,
INSD:AV440986.1,INSD:DR299086.1,INSD:EL149711.1,
INSD:BX838291.1,INSD:BP640113.1,INSD:ES190475.1,
INSD:BP656751.1,INSD:T42461.1,INSD:BP598699.1,
INSD:AV558236.1,INSD:BP618705.1,INSD:ES191985.1,
INSD:AV819177.1,INSD:AV442165.1,INSD:BP623645.1,
INSD:BP658656.1,INSD:AV550410.1,INSD:BP644843.1,
INSD:BP660391.1,INSD:EH820893.1,INSD:AV552254.1,
INSD:ES168104.1,INSD:AV798118.1,INSD:AV559160.1,
INSD:BP637012.1,INSD:BP670741.1,INSD:AV548313.1,
INSD:EL101795.1,INSD:BP844551.1,INSD:EL240646.1,
INSD:ES135735.1,INSD:EH918325.1,INSD:BP654077.1,
INSD:DR299087.1,INSD:BP629180.1,INSD:ES194332.1,
INSD:BP795117.1,INSD:AI993025.1,INSD:DR299088.1,
INSD:EL237425.1,INSD:AV560528.1,INSD:AV547307.1,
INSD:DR299089.1,INSD:ES180827.1,INSD:EG466472.1,
INSD:CB259794.1,INSD:AV814286.1,INSD:BP792869.1,
INSD:ES019466.1,INSD:AA395061.1,INSD:AV530788.1,
INSD:DR370018.1,INSD:BP657134.1,INSD:AV539142.1,
INSD:BP840606.1,INSD:AV819738.1,INSD:BP577288.1,
INSD:EL114094.1,INSD:ES207811.1,INSD:BP822908.1,
INSD:EL035195.1,INSD:CB255012.1,INSD:AU226907.1,
INSD:EH919285.1,INSD:EH902647.1,INSD:ES129671.1,
INSD:EH874499.1,INSD:EL207816.1,INSD:ES039950.1,
INSD:BP658376.1,INSD:DR299090.1,INSD:BP671582.1,
INSD:EL167053.1,INSD:BP633232.1,INSD:EL208202.1,
INSD:EL967705.1,INSD:ES188450.1,INSD:EL318498.1,
INSD:ES202449.1,INSD:EH906574.1,INSD:EG466471.1,
INSD:BP660775.1,INSD:BP651564.1,INSD:ES203708.1,
INSD:AV789510.1,INSD:DR377491.1,INSD:ES162325.1,
INSD:AV798441.1,INSD:BP822750.1,INSD:BP621202.1,
INSD:BX834766.1,INSD:AV565405.1,INSD:DR382961.1,
INSD:DR299085.1,INSD:EL181207.1,INSD:BP617010.1,
INSD:AV808017.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY087312.1,INSD:BX829375.1,INSD:BX826391.1,
INSD:BX841559.1,INSD:BT008333.1"
/note="vernalization independence 3 (VIP3); FUNCTIONS IN:
protein binding, nucleotide binding; INVOLVED IN: histone
H3-K4 methylation, histone H3-K36 methylation, negative
regulation of flower development; LOCATED IN: CUL4 RING
ubiquitin ligase complex, heterotrimeric G-protein
complex; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40
repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site
(InterPro:IPR019775), WD40 repeat (InterPro:IPR001680),
G-protein beta WD-40 repeat, region (InterPro:IPR020472),
WD40 repeat-like-containing domain (InterPro:IPR011046),
WD40-repeat-containing domain (InterPro:IPR017986),
WD40/YVTN repeat-like-containing domain
(InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: WD-40 repeat family protein / small nuclear
ribonucleoprotein Prp4p-related (TAIR:AT2G41500.1); Has
81424 Blast hits to 33679 proteins in 849 species: Archae
- 94; Bacteria - 9736; Metazoa - 32144; Fungi - 18699;
Plants - 10476; Viruses - 0; Other Eukaryotes - 10275
(source: NCBI BLink)."
/db_xref="TAIR:AT4G29830"
/db_xref="Araport:AT4G29830"
intron_pos 114:0 (1/1)
BEGIN
1 MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS
61 LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA PPSEVWGMQF EPKGTILAVA
121 GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG
181 TICVFDVDRS KLLHQLEGHN MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS
241 GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG
301 VRAGRLASVS DDKSVSLYDY S
//