LOCUS AEE85683.1 321 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein protein. ACCESSION CP002687-5413 PROTEIN_ID AEE85683.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="VIP3" /locus_tag="AT4G29830" /gene_synonym="A. thaliana homolog of yeast SKI8" /gene_synonym="F27B13.70" /gene_synonym="F27B13_70" /gene_synonym="SKI8" /gene_synonym="vernalization independence 3" /inference="Similar to RNA sequence, EST:INSD:ES199848.1,INSD:BP593297.1,INSD:ES192431.1, INSD:ES190566.1,INSD:BP617374.1,INSD:AV784250.1, INSD:BP864602.1,INSD:EL319815.1,INSD:BU635209.1, INSD:AV440986.1,INSD:DR299086.1,INSD:EL149711.1, INSD:BX838291.1,INSD:BP640113.1,INSD:ES190475.1, INSD:BP656751.1,INSD:T42461.1,INSD:BP598699.1, INSD:AV558236.1,INSD:BP618705.1,INSD:ES191985.1, INSD:AV819177.1,INSD:AV442165.1,INSD:BP623645.1, INSD:BP658656.1,INSD:AV550410.1,INSD:BP644843.1, INSD:BP660391.1,INSD:EH820893.1,INSD:AV552254.1, INSD:ES168104.1,INSD:AV798118.1,INSD:AV559160.1, INSD:BP637012.1,INSD:BP670741.1,INSD:AV548313.1, INSD:EL101795.1,INSD:BP844551.1,INSD:EL240646.1, INSD:ES135735.1,INSD:EH918325.1,INSD:BP654077.1, INSD:DR299087.1,INSD:BP629180.1,INSD:ES194332.1, INSD:BP795117.1,INSD:AI993025.1,INSD:DR299088.1, INSD:EL237425.1,INSD:AV560528.1,INSD:AV547307.1, INSD:DR299089.1,INSD:ES180827.1,INSD:EG466472.1, INSD:CB259794.1,INSD:AV814286.1,INSD:BP792869.1, INSD:ES019466.1,INSD:AA395061.1,INSD:AV530788.1, INSD:DR370018.1,INSD:BP657134.1,INSD:AV539142.1, INSD:BP840606.1,INSD:AV819738.1,INSD:BP577288.1, INSD:EL114094.1,INSD:ES207811.1,INSD:BP822908.1, INSD:EL035195.1,INSD:CB255012.1,INSD:AU226907.1, INSD:EH919285.1,INSD:EH902647.1,INSD:ES129671.1, INSD:EH874499.1,INSD:EL207816.1,INSD:ES039950.1, INSD:BP658376.1,INSD:DR299090.1,INSD:BP671582.1, INSD:EL167053.1,INSD:BP633232.1,INSD:EL208202.1, INSD:EL967705.1,INSD:ES188450.1,INSD:EL318498.1, INSD:ES202449.1,INSD:EH906574.1,INSD:EG466471.1, INSD:BP660775.1,INSD:BP651564.1,INSD:ES203708.1, INSD:AV789510.1,INSD:DR377491.1,INSD:ES162325.1, INSD:AV798441.1,INSD:BP822750.1,INSD:BP621202.1, INSD:BX834766.1,INSD:AV565405.1,INSD:DR382961.1, INSD:DR299085.1,INSD:EL181207.1,INSD:BP617010.1, INSD:AV808017.1" /inference="Similar to RNA sequence, mRNA:INSD:AY087312.1,INSD:BX829375.1,INSD:BX826391.1, INSD:BX841559.1,INSD:BT008333.1" /note="vernalization independence 3 (VIP3); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: histone H3-K4 methylation, histone H3-K36 methylation, negative regulation of flower development; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (TAIR:AT2G41500.1); Has 81424 Blast hits to 33679 proteins in 849 species: Archae - 94; Bacteria - 9736; Metazoa - 32144; Fungi - 18699; Plants - 10476; Viruses - 0; Other Eukaryotes - 10275 (source: NCBI BLink)." /db_xref="TAIR:AT4G29830" /db_xref="Araport:AT4G29830" intron_pos 114:0 (1/1) BEGIN 1 MKLAGLKSIE NAHEDSVWAA TWVPATEDRP ALLLTGSLDE TVKLWRPDEL DLVRTNTGHS 61 LGVAALAAHP SGIIAASSSI DSFVRVFDVD TNATIAVLEA PPSEVWGMQF EPKGTILAVA 121 GGSSASVKLW DTASWRLIST LSIPRPDAPK PSDKTSSKKF VLSVAWSPNG KRLACGSMDG 181 TICVFDVDRS KLLHQLEGHN MPVRSLVFSP VDPRVLFSGS DDGHVNMHDA EGKTLLGSMS 241 GHTSWVLSVD ASPDGGAIAT GSSDRTVRLW DLKMRAAIQT MSNHNDQVWS VAFRPPGGTG 301 VRAGRLASVS DDKSVSLYDY S //