LOCUS AEE85127.1 861 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana pumilio 6 protein.
ACCESSION CP002687-4659
PROTEIN_ID AEE85127.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="PUM6"
/locus_tag="AT4G25880"
/gene_synonym="APUM6"
/gene_synonym="F14M19.160"
/gene_synonym="F14M19_160"
/gene_synonym="pumilio 6"
/inference="Similar to RNA sequence,
EST:INSD:ES206257.1,INSD:AV528109.1,INSD:AV782452.1,
INSD:BP804752.1,INSD:BP571441.1,INSD:AV523596.1,
INSD:AV816996.1,INSD:BP564825.1,INSD:BP599676.1,
INSD:EL069224.1,INSD:AV799006.1,INSD:EL186693.1,
INSD:AV528227.1,INSD:EL016582.1,INSD:BP572506.1,
INSD:ES163760.1,INSD:AV529303.1,INSD:BP564649.1,
INSD:ES172859.1,INSD:AV831819.1,INSD:BU636414.1,
INSD:BP600187.1,INSD:BP582859.1,INSD:EL187348.1,
INSD:BP609824.1,INSD:BP613927.1,INSD:EL175702.1,
INSD:BP614231.1,INSD:EG423889.1,INSD:EG423887.1,
INSD:EH979550.1,INSD:AA597645.1,INSD:EH845877.1,
INSD:BP805538.1,INSD:EL152796.1,INSD:BP613614.1,
INSD:EG485812.1,INSD:BP568268.1,INSD:BP583546.1,
INSD:EH846275.1,INSD:BP816287.1,INSD:EH918619.1,
INSD:EL238207.1,INSD:AV799012.1,INSD:EH950198.1,
INSD:BP564101.1,INSD:BP791105.1,INSD:BP578892.1,
INSD:BP579125.1,INSD:EH929479.1,INSD:EL998906.1,
INSD:EL220986.1,INSD:EG438728.1,INSD:BP583263.1,
INSD:EH867887.1,INSD:AV522786.1,INSD:BP579448.1,
INSD:EG438727.1,INSD:ES142371.1,INSD:BP640401.1,
INSD:AV793582.1,INSD:BP619136.1,INSD:EL068795.1,
INSD:BP611998.1,INSD:BP787995.1,INSD:EH876656.1,
INSD:AV827690.1,INSD:EL029385.1,INSD:EL012623.1,
INSD:EL136215.1,INSD:ES142384.1,INSD:EL127392.1,
INSD:ES038286.1,INSD:AV528308.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY133866.1,INSD:BX826676.1,INSD:AF360298.1"
/note="pumilio 6 (PUM6); FUNCTIONS IN: RNA binding,
binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Pumilio RNA-binding repeat
(InterPro:IPR001313), Armadillo-like helical
(InterPro:IPR011989), Armadillo-type fold
(InterPro:IPR016024); BEST Arabidopsis thaliana protein
match is: pumilio 5 (TAIR:AT3G20250.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G25880"
/db_xref="Araport:AT4G25880"
intron_pos 166:0 (1/8)
intron_pos 541:2 (2/8)
intron_pos 589:0 (3/8)
intron_pos 625:0 (4/8)
intron_pos 696:0 (5/8)
intron_pos 733:0 (6/8)
intron_pos 798:0 (7/8)
intron_pos 855:1 (8/8)
BEGIN
1 MATENPIRIS GSNERWSNSR KVSVPNRSGS APPNMEGSFL AVDNLLSRQG GSVYNNLMLP
61 RYGFEEPVTT HPSSKHSLNR IPSPPIYYPT EYQFIDNRVG RFRSNQGLNK VNSPIHLSQG
121 KLSTHKEVSE DESSQQLSVN SVSDRTDGLD IRLSPGSQSL ADFRQDDTSS GQTPQHSRSN
181 SSNGEVNTAD ESGNFSELSD DVVVKDNAAS TARASIGNEK SPDESTIISK MKSTNISGPG
241 TAKYPREPRY GQPERQPHQQ QNNATWIQGG SNMGSHGVND AVIGAGQFHY GQPYKFSGDG
301 QPVLQSSGFT PPLLYTATQT AYMTSPAHVY NMQSPAVYSP QYGYGPYTNM IPQFMPGYPS
361 HGSVPVVVSP DFIPQLSGPS AGSVVHGGEM QYAEKLYVPP GQPSFPDPMY MQYCQQSFGQ
421 MEPLAPRNHT NAPESQKDDP KFLRQIRGPS NSNMARPGMG VNYYGIQPNM GIMVQYLPTH
481 LGPPLSPGHV PYVEAYPGWQ PQGSLEGANG PRLCNFLEEL KSGKGRRFDL SDITGHIVEF
541 SADQHGSRFI QQKLENCKPE EKAAVFREIL PHACKLMTDV FGNYVIQKFF EYGNSTQRKE
601 LADQLMGQIV PLSLQMYGCR VIQKALDVIE PDQRVRLARE LDGQVMRCVR DQNGNHVIQK
661 CIENIPADKV GFMLYAFRGQ VSSLSMHPYG CRVIQRLLER CSHDHQCRFI TEEILESVCV
721 LSKDQYGNYV TQHVLEKGTS EERERIGRKL SGHIVQLSLH KFASNVIEKC LEYGGRVERD
781 LIIKEIAGPD ESYNSLLMMM KDQYGNYVVQ KIFETCTADQ RLTLFSRVRM HASALKKYTY
841 GKHIVSRLEQ PSIEENQELR R
//