LOCUS AEE85069.1 317 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana arginine/serine-rich splicing factor
35 protein.
ACCESSION CP002687-4583
PROTEIN_ID AEE85069.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="RS40"
/locus_tag="AT4G25500"
/gene_synonym="ARABIDOPSIS THALIANA ARGININE/SERINE-RICH
SPLICING FACTOR 35"
/gene_synonym="ARGININE/SERINE-RICH SPLICING FACTOR"
/gene_synonym="arginine/serine-rich splicing factor 35"
/gene_synonym="arginine/serine-rich splicing factor 40"
/gene_synonym="At-RS40"
/gene_synonym="AT-SRP40"
/gene_synonym="ATRSP35"
/gene_synonym="ATRSP40"
/gene_synonym="RSP35"
/gene_synonym="SPLICING FACTOR AT-SRP40"
/gene_synonym="T30C3.9"
/inference="Similar to RNA sequence,
EST:INSD:BP624537.1,INSD:DR380094.1,INSD:DR296172.1,
INSD:EH957481.1,INSD:AA713267.1,INSD:EG517882.1,
INSD:BP855272.1,INSD:BP657629.1,INSD:EH851458.1,
INSD:EG521017.1,INSD:EL219826.1,INSD:EG517881.1,
INSD:BP641618.1,INSD:EG527328.1,INSD:DR296171.1,
INSD:EG521018.1,INSD:EG527179.1,INSD:BP659748.1,
INSD:DR296170.1,INSD:BP623631.1,INSD:EL091390.1,
INSD:AV553605.1,INSD:BP635287.1,INSD:ES181907.1,
INSD:DR296175.1,INSD:DR363791.1,INSD:T22496.1,
INSD:EL153456.1,INSD:DR296174.1,INSD:EL085958.1,
INSD:EL098212.1,INSD:BP638496.1,INSD:EH857014.1,
INSD:ES023930.1,INSD:DR296173.1,INSD:BP809954.1,
INSD:ES124391.1,INSD:ES012094.1,INSD:AV781885.1,
INSD:BP668110.1,INSD:EL990638.1,INSD:BP633340.1,
INSD:BP644466.1,INSD:ES035250.1"
/note="arginine/serine-rich splicing factor 35 (RSP35);
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: nuclear mRNA splicing, via
spliceosome, RNA splicing; LOCATED IN: nuclear speck,
spliceosomal complex; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: RNA-binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT5G52040.4); Has 12133 Blast hits to 9335 proteins
in 376 species: Archae - 0; Bacteria - 104; Metazoa -
8049; Fungi - 1339; Plants - 1578; Viruses - 48; Other
Eukaryotes - 1015 (source: NCBI BLink)."
/db_xref="TAIR:AT4G25500"
/db_xref="Araport:AT4G25500"
intron_pos 3:1 (1/4)
intron_pos 41:0 (2/4)
intron_pos 121:2 (3/4)
intron_pos 307:2 (4/4)
BEGIN
1 MQGFAFVYME DERDAEDAIR ALDRFEFGRK GRRLRVEWTK SERGGDKRSG GGSRRSSSSM
61 RPSKTLFVIN FDADNTRTRD LEKHFEPYGK IVNVRIRRNF AFIQYEAQED ATRALDASNN
121 SKLMDKVISV EYAVKDDDAR GNGHSPERRR DRSPERRRRS PSPYKRERGS PDYGRGASPV
181 AAYRKERTSP DYGRRRSPSP YKKSRRGSPE YGRDRRGNDS PRRRERVASP TKYSRSPNNK
241 RERMSPNHSP FKKESPRNGV GEVESPIERR ERSRSSPENG QVESPGSIGR RDSDGGYDGA
301 ESPMQKSRSP RSPPADE
//