LOCUS AEE84810.1 444 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002687-4217
PROTEIN_ID AEE84810.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G23820"
/gene_synonym="T32A16.3"
/inference="Similar to RNA sequence,
EST:INSD:ES041953.1,INSD:EH866305.1,INSD:EL315452.1,
INSD:BP614131.1,INSD:EL212709.1,INSD:BP830172.1,
INSD:EL102254.1,INSD:DR282815.1,INSD:EL189677.1,
INSD:EL010654.1,INSD:BP805685.1,INSD:EH905853.1,
INSD:EL064453.1,INSD:BP861844.1,INSD:EG521470.1,
INSD:BP601660.1,INSD:EL041190.1,INSD:F14038.1,
INSD:AV533129.1,INSD:EL216950.1,INSD:DR282810.1,
INSD:EG497410.1,INSD:BP805260.1,INSD:AV532487.1,
INSD:BP668149.1,INSD:AV531279.1,INSD:BP806655.1,
INSD:DR282819.1,INSD:EG521452.1,INSD:EL206823.1,
INSD:EL107681.1,INSD:EH816220.1,INSD:EH914944.1,
INSD:BP626498.1,INSD:DR282824.1,INSD:EH862548.1,
INSD:EL106404.1,INSD:AV795990.1,INSD:BP588150.1,
INSD:BP606594.1,INSD:BP794189.1,INSD:DR282811.1,
INSD:F13943.1,INSD:EL266799.1,INSD:ES149424.1,
INSD:EL207499.1,INSD:EL040863.1,INSD:EH917824.1,
INSD:EL267625.1,INSD:BP599764.1,INSD:EL132841.1,
INSD:AV527860.1,INSD:BP602756.1,INSD:AV804450.1,
INSD:EG490382.1,INSD:EL220759.1,INSD:BP616514.1,
INSD:EL073378.1,INSD:BP622570.1,INSD:EL290725.1,
INSD:EL053478.1,INSD:AV532581.1,INSD:EL134292.1,
INSD:DR282812.1,INSD:DR282821.1,INSD:EL995511.1,
INSD:EH815270.1,INSD:EG521478.1,INSD:BP607974.1,
INSD:EL071547.1,INSD:EG521482.1,INSD:EH948029.1,
INSD:ES173247.1,INSD:AV532636.1,INSD:AI998927.1,
INSD:BP621842.1,INSD:EH828782.1,INSD:EH867487.1,
INSD:DR357621.1,INSD:AA651263.1,INSD:BP609386.1,
INSD:DR282813.1,INSD:DR282820.1,INSD:BP613641.1,
INSD:CB264520.1,INSD:BP867397.1,INSD:BP818138.2,
INSD:BP606660.1,INSD:EL067800.1,INSD:AV826655.1,
INSD:EL172250.1,INSD:BP614282.1,INSD:DR282823.1,
INSD:EL027182.1,INSD:AV532576.1,INSD:BP786776.1,
INSD:BP866948.1,INSD:EL270522.1,INSD:BE522173.1,
INSD:EH835647.1,INSD:EL126836.1,INSD:DR282817.1,
INSD:H36367.1,INSD:EL220836.1,INSD:DR282814.1,
INSD:BP603239.1,INSD:AV560619.1,INSD:EH973136.1,
INSD:EH896560.1,INSD:EH975970.1,INSD:EL327950.1,
INSD:EH898894.1,INSD:BP831446.1,INSD:DR379895.1,
INSD:AV521176.1,INSD:DR282818.1,INSD:EH879215.1,
INSD:BP612889.1,INSD:ES063778.1,INSD:EL180445.1,
INSD:EL213499.1,INSD:EL044336.1,INSD:EH848671.1,
INSD:AV562553.1,INSD:EH919412.1,INSD:BE522172.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX826583.1,INSD:AY128793.1,INSD:AY062697.1,
INSD:BX827554.1,INSD:BX828415.1"
/note="Pectin lyase-like superfamily protein; FUNCTIONS
IN: polygalacturonase activity; INVOLVED IN: carbohydrate
metabolic process; LOCATED IN: endomembrane system;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase
fold/virulence factor (InterPro:IPR011050), Glycoside
hydrolase, family 28 (InterPro:IPR000743), Pectin lyase
fold (InterPro:IPR012334), Parallel beta-helix repeat
(InterPro:IPR006626); BEST Arabidopsis thaliana protein
match is: Pectin lyase-like superfamily protein
(TAIR:AT5G41870.1); Has 4183 Blast hits to 4168 proteins
in 506 species: Archae - 6; Bacteria - 1472; Metazoa - 14;
Fungi - 1146; Plants - 1414; Viruses - 0; Other Eukaryotes
- 131 (source: NCBI BLink)."
/db_xref="TAIR:AT4G23820"
/db_xref="Araport:AT4G23820"
intron_pos 111:0 (1/4)
intron_pos 151:1 (2/4)
intron_pos 209:2 (3/4)
intron_pos 233:1 (4/4)
BEGIN
1 MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF
61 RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL AKGAVIRAVQ DTWNWPLIDP
121 LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI
181 EFKDSKEIII SNVIFQNSPF WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI
241 EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII
301 AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA
361 LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN LHGSLNSYKT WKCSDVSGTS
421 LKVSPWPCSE LRTTGGSNLC SSTF
//