LOCUS AEE84810.1 444 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein. ACCESSION CP002687-4217 PROTEIN_ID AEE84810.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /locus_tag="AT4G23820" /gene_synonym="T32A16.3" /inference="Similar to RNA sequence, EST:INSD:ES041953.1,INSD:EH866305.1,INSD:EL315452.1, INSD:BP614131.1,INSD:EL212709.1,INSD:BP830172.1, INSD:EL102254.1,INSD:DR282815.1,INSD:EL189677.1, INSD:EL010654.1,INSD:BP805685.1,INSD:EH905853.1, INSD:EL064453.1,INSD:BP861844.1,INSD:EG521470.1, INSD:BP601660.1,INSD:EL041190.1,INSD:F14038.1, INSD:AV533129.1,INSD:EL216950.1,INSD:DR282810.1, INSD:EG497410.1,INSD:BP805260.1,INSD:AV532487.1, INSD:BP668149.1,INSD:AV531279.1,INSD:BP806655.1, INSD:DR282819.1,INSD:EG521452.1,INSD:EL206823.1, INSD:EL107681.1,INSD:EH816220.1,INSD:EH914944.1, INSD:BP626498.1,INSD:DR282824.1,INSD:EH862548.1, INSD:EL106404.1,INSD:AV795990.1,INSD:BP588150.1, INSD:BP606594.1,INSD:BP794189.1,INSD:DR282811.1, INSD:F13943.1,INSD:EL266799.1,INSD:ES149424.1, INSD:EL207499.1,INSD:EL040863.1,INSD:EH917824.1, INSD:EL267625.1,INSD:BP599764.1,INSD:EL132841.1, INSD:AV527860.1,INSD:BP602756.1,INSD:AV804450.1, INSD:EG490382.1,INSD:EL220759.1,INSD:BP616514.1, INSD:EL073378.1,INSD:BP622570.1,INSD:EL290725.1, INSD:EL053478.1,INSD:AV532581.1,INSD:EL134292.1, INSD:DR282812.1,INSD:DR282821.1,INSD:EL995511.1, INSD:EH815270.1,INSD:EG521478.1,INSD:BP607974.1, INSD:EL071547.1,INSD:EG521482.1,INSD:EH948029.1, INSD:ES173247.1,INSD:AV532636.1,INSD:AI998927.1, INSD:BP621842.1,INSD:EH828782.1,INSD:EH867487.1, INSD:DR357621.1,INSD:AA651263.1,INSD:BP609386.1, INSD:DR282813.1,INSD:DR282820.1,INSD:BP613641.1, INSD:CB264520.1,INSD:BP867397.1,INSD:BP818138.2, INSD:BP606660.1,INSD:EL067800.1,INSD:AV826655.1, INSD:EL172250.1,INSD:BP614282.1,INSD:DR282823.1, INSD:EL027182.1,INSD:AV532576.1,INSD:BP786776.1, INSD:BP866948.1,INSD:EL270522.1,INSD:BE522173.1, INSD:EH835647.1,INSD:EL126836.1,INSD:DR282817.1, INSD:H36367.1,INSD:EL220836.1,INSD:DR282814.1, INSD:BP603239.1,INSD:AV560619.1,INSD:EH973136.1, INSD:EH896560.1,INSD:EH975970.1,INSD:EL327950.1, INSD:EH898894.1,INSD:BP831446.1,INSD:DR379895.1, INSD:AV521176.1,INSD:DR282818.1,INSD:EH879215.1, INSD:BP612889.1,INSD:ES063778.1,INSD:EL180445.1, INSD:EL213499.1,INSD:EL044336.1,INSD:EH848671.1, INSD:AV562553.1,INSD:EH919412.1,INSD:BE522172.1" /inference="Similar to RNA sequence, mRNA:INSD:BX826583.1,INSD:AY128793.1,INSD:AY062697.1, INSD:BX827554.1,INSD:BX828415.1" /note="Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G41870.1); Has 4183 Blast hits to 4168 proteins in 506 species: Archae - 6; Bacteria - 1472; Metazoa - 14; Fungi - 1146; Plants - 1414; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink)." /db_xref="TAIR:AT4G23820" /db_xref="Araport:AT4G23820" intron_pos 111:0 (1/4) intron_pos 151:1 (2/4) intron_pos 209:2 (3/4) intron_pos 233:1 (4/4) BEGIN 1 MWRLSVSIFL FSCLFVSSSS LGDSEATCSG IVPLRYRYDK ISITDFGGVG DGRTVNTKAF 61 RAAIYRIQHL KRRGGTLLYI PPGVYLTESF NLTSHMTLYL AKGAVIRAVQ DTWNWPLIDP 121 LPSYGRGREL PGGRYMSFIH GDGLRDVVIT GQNGTIDGQG EVWWNMWRSR TLKYTRPNLI 181 EFKDSKEIII SNVIFQNSPF WNIHPVYCSN VVIHHVTILA PQDSPNTDGI DPDSSYNVCI 241 EDSYISTGDD LVAIKSGWDQ YGIAYGRPSS NITIRRITGS SPFAGIAIGS ETSGGIKNII 301 AEHITLSNMG VGVNIKTNIG RGGYIKNIKI SDVYVDTAKY GIKIAGDTGD HPDENYNPNA 361 LPVVKGIHIK NVWGVNVRNA GSIQGLKGSP FTGICLSEIN LHGSLNSYKT WKCSDVSGTS 421 LKVSPWPCSE LRTTGGSNLC SSTF //