LOCUS AEE84401.1 1088 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana damaged DNA binding protein 1B protein.
ACCESSION CP002687-3679
PROTEIN_ID AEE84401.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="DDB1B"
/locus_tag="AT4G21100"
/gene_synonym="damaged DNA binding protein 1B"
/gene_synonym="F7J7.40"
/gene_synonym="F7J7_40"
/inference="Similar to RNA sequence,
EST:INSD:AV524072.1,INSD:ES057053.1,INSD:EH946063.1,
INSD:EH877769.1,INSD:ES131128.1,INSD:ES135855.1,
INSD:ES050722.1,INSD:EL976022.1,INSD:EL085997.1,
INSD:AI997568.1,INSD:BP801117.1,INSD:BP868900.1,
INSD:BP788076.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK229805.1,INSD:AK220648.1"
/note="damaged DNA binding protein 1B (DDB1B); CONTAINS
InterPro DOMAIN/s: WD40 repeat-like-containing domain
(InterPro:IPR011046), Cleavage/polyadenylation specificity
factor, A subunit, C-terminal (InterPro:IPR004871); BEST
Arabidopsis thaliana protein match is: damaged DNA binding
protein 1A (TAIR:AT4G05420.1); Has 1459 Blast hits to 1199
proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa
- 547; Fungi - 391; Plants - 235; Viruses - 0; Other
Eukaryotes - 286 (source: NCBI BLink)."
/db_xref="TAIR:AT4G21100"
/db_xref="Araport:AT4G21100"
intron_pos 35:2 (1/18)
intron_pos 52:0 (2/18)
intron_pos 72:0 (3/18)
intron_pos 102:2 (4/18)
intron_pos 120:0 (5/18)
intron_pos 141:0 (6/18)
intron_pos 157:2 (7/18)
intron_pos 183:0 (8/18)
intron_pos 253:0 (9/18)
intron_pos 288:2 (10/18)
intron_pos 325:0 (11/18)
intron_pos 392:0 (12/18)
intron_pos 464:0 (13/18)
intron_pos 501:0 (14/18)
intron_pos 593:0 (15/18)
intron_pos 684:2 (16/18)
intron_pos 801:0 (17/18)
intron_pos 896:0 (18/18)
BEGIN
1 MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG
61 RIATMELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI TRAMGDVSDR IGRPTDNGQI
121 GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL
181 YQDNKDARHV KTYEVSLKDK NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC
241 SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET
301 SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE
361 RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK GMWSLKSSID EAFDTFLVVS
421 FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR
481 NKWDAPAGFS VNVATANASQ VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI
541 GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL
601 GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL
661 LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP IGEHARRICH
721 QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK
781 NVYYCVGTAY VLPEENEPTK GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN
841 QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA
901 IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG
961 EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS LPQEQYAFLE KLQTSLRKVI
1021 KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR
1081 VEELTRLH
//