LOCUS AEE84401.1 1088 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana damaged DNA binding protein 1B protein. ACCESSION CP002687-3679 PROTEIN_ID AEE84401.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="DDB1B" /locus_tag="AT4G21100" /gene_synonym="damaged DNA binding protein 1B" /gene_synonym="F7J7.40" /gene_synonym="F7J7_40" /inference="Similar to RNA sequence, EST:INSD:AV524072.1,INSD:ES057053.1,INSD:EH946063.1, INSD:EH877769.1,INSD:ES131128.1,INSD:ES135855.1, INSD:ES050722.1,INSD:EL976022.1,INSD:EL085997.1, INSD:AI997568.1,INSD:BP801117.1,INSD:BP868900.1, INSD:BP788076.1" /inference="Similar to RNA sequence, mRNA:INSD:AK229805.1,INSD:AK220648.1" /note="damaged DNA binding protein 1B (DDB1B); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.1); Has 1459 Blast hits to 1199 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 547; Fungi - 391; Plants - 235; Viruses - 0; Other Eukaryotes - 286 (source: NCBI BLink)." /db_xref="TAIR:AT4G21100" /db_xref="Araport:AT4G21100" intron_pos 35:2 (1/18) intron_pos 52:0 (2/18) intron_pos 72:0 (3/18) intron_pos 102:2 (4/18) intron_pos 120:0 (5/18) intron_pos 141:0 (6/18) intron_pos 157:2 (7/18) intron_pos 183:0 (8/18) intron_pos 253:0 (9/18) intron_pos 288:2 (10/18) intron_pos 325:0 (11/18) intron_pos 392:0 (12/18) intron_pos 464:0 (13/18) intron_pos 501:0 (14/18) intron_pos 593:0 (15/18) intron_pos 684:2 (16/18) intron_pos 801:0 (17/18) intron_pos 896:0 (18/18) BEGIN 1 MSVWNYAVTA QKPTCVTHSC VGNFTSPQEL NLIVAKSTRI EIHLLSPQGL QTILDVPLYG 61 RIATMELFRP HGEAQDFLFV ATERYKFCVL QWDYESSELI TRAMGDVSDR IGRPTDNGQI 121 GIIDPDCRVI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLY GCTKPTIAVL 181 YQDNKDARHV KTYEVSLKDK NFVEGPWSQN NLDNGADLLI PVPSPLCGVL IIGEETIVYC 241 SANAFKAIPI RPSITKAYGR VDLDGSRYLL GDHAGLIHLL VITHEKEKVT GLKIELLGET 301 SIASSISYLD NAVVFVGSSY GDSQLIKLNL QPDAKGSYVE ILEKYVNLGP IVDFCVVDLE 361 RQGQGQVVTC SGAYKDGSLR IVRNGIGINE QASVELQGIK GMWSLKSSID EAFDTFLVVS 421 FISETRILAM NIEDELEETE IEGFLSEVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR 481 NKWDAPAGFS VNVATANASQ VLLATGGGHL VYLEIGDGTL TEVKHVLLEY EVSCLDINPI 541 GDNPNYSQLA AVGMWTDISV RIFVLPDLTL ITKEELGGEI IPRSVLLCAF EGISYLLCAL 601 GDGHLLNFQL DTSCGKLRDR KKVSLGTRPI TLRTFSSKSA THVFAASDRP AVIYSNNKKL 661 LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP IGEHARRICH 721 QEQTRTFAIS CLRNEPSAEE SESHFVRLLD AQSFEFLSSY PLDAFECGCS ILSCSFTDDK 781 NVYYCVGTAY VLPEENEPTK GRILVFIVEE GRLQLITEKE TKGAVYSLNA FNGKLLASIN 841 QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI AVGDLMKSIS LLIYKHEEGA 901 IEERARDYNA NWMTAVEILN DDIYLGTDNC FNIFTVKKNN EGATDEERAR MEVVGEYHIG 961 EFVNRFRHGS LVMKLPDSDI GQIPTVIFGT VSGMIGVIAS LPQEQYAFLE KLQTSLRKVI 1021 KGVGGLSHEQ WRSFNNEKRT AEAKGYLDGD LIESFLDLSR GKMEEISKGM DVQVEELCKR 1081 VEELTRLH //