LOCUS AEE83721.1 1164 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana phytochrome D protein.
ACCESSION CP002687-2672
PROTEIN_ID AEE83721.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="PHYD"
/locus_tag="AT4G16250"
/gene_synonym="DL4165C"
/gene_synonym="FCAALL.323"
/gene_synonym="phytochrome D"
/gene_synonym="PHYTOCHROME D"
/inference="Similar to RNA sequence,
EST:INSD:ES076442.1,INSD:EH880903.1,INSD:EL091764.1,
INSD:ES020846.1"
/note="phytochrome D (PHYD); CONTAINS InterPro DOMAIN/s:
Phytochrome, central region (InterPro:IPR013515), Signal
transduction histidine kinase, core (InterPro:IPR005467),
PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014),
Phytochrome chromophore attachment domain
(InterPro:IPR016132), ATPase-like, ATP-binding domain
(InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654),
Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome
(InterPro:IPR001294), Phytochrome chromophore binding site
(InterPro:IPR013516), Signal transduction histidine
kinase, subgroup 1, dimerisation/phosphoacceptor domain
(InterPro:IPR003661), GAF (InterPro:IPR003018); BEST
Arabidopsis thaliana protein match is: phytochrome B
(TAIR:AT2G18790.1); Has 26426 Blast hits to 26152 proteins
in 3833 species: Archae - 221; Bacteria - 20797; Metazoa -
4; Fungi - 482; Plants - 3855; Viruses - 5; Other
Eukaryotes - 1062 (source: NCBI BLink)."
/db_xref="TAIR:AT4G16250"
/db_xref="Araport:AT4G16250"
intron_pos 726:1 (1/3)
intron_pos 995:2 (2/3)
intron_pos 1092:2 (3/3)
BEGIN
1 MVSGGGSKTS GGEAASSGHR RSRHTSAAEQ AQSSANKALR SQNQQPQNHG GGTESTNKAI
61 QQYTVDARLH AVFEQSGESG KSFDYSQSLK TAPYDSSVPE QQITAYLSRI QRGGYTQPFG
121 CLIAVEESTF TIIGYSENAR EMLGLMSQSV PSIEDKSEVL TIGTDLRSLF KSSSYLLLER
181 AFVAREITLL NPIWIHSNNT GKPFYAILHR VDVGILIDLE PARTEDPALS IAGAVQSQKL
241 AVRAISHLQS LPSGDIKLLC DTVVESVRDL TGYDRVMVYK FHEDEHGEVV AESKRNDLEP
301 YIGLHYPATD IPQASRFLFK QNRVRMIVDC YASPVRVVQD DRLTQFICLV GSTLRAPHGC
361 HAQYMTNMGS IASLAMAVII NGNEEDGNGV NTGGRNSMRL WGLVVCHHTS ARCIPFPLRY
421 ACEFLMQAFG LQLNMELQLA LQVSEKRVLR MQTLLCDMLL RDSPAGIVTQ RPSIMDLVKC
481 NGAAFLYQGK YYPLGVTPTD SQINDIVEWL VANHSDSTGL STDSLGDAGY PRAAALGDAV
541 CGMAVACITK RDFLFWFRSH TEKEIKWGGA KHHPEDKDDG QRMNPRSSFQ TFLEVVKSRC
601 QPWETAEMDA IHSLQLILRD SFKESEAMDS KAAAAGAVQP HGDDMVQQGM QEIGAVAREM
661 VRLIETATVP IFAVDIDGCI NGWNAKIAEL TGLSVEDAMG KSLVRELIYK EYKETVDRLL
721 SCALKGDEGK NVEVKLKTFG SELQGKAMFV VVNACSSKDY LNNIVGVCFV GQDVTGHKIV
781 MDKFINIQGD YKAIIHSPNP LIPPIFAADE NTCCLEWNTA MEKLTGWPRS EVIGKLLVRE
841 VFGSYCRLKG PDALTKFMIV LHNAIGGQDT DKFPFPFFDR KGEFIQALLT LNKRVSIDGK
901 IIGAFCFLQI PSPELQQALE VQRRQESEYF SRRKELAYIF QVIKNPLSGL RFTNSLLEDM
961 DLNEDQKQLL ETSVSCEKQI SKIVGDMDVK SIDDGSFLLE RTEFFIGNVT NAVVSQVMLV
1021 VRERNLQLIR NIPTEVKSMA VYGDQIRLQQ VLAEFLLSIV RYAPMEGSVE LHLCPTLNQM
1081 ADGFSAVRLE FRMACAGEGV PPEKVQDMFH SSRWTSPEGL GLSVCRKILK LMNGGVQYIR
1141 EFERSYFLIV IELPVPLMMM MPSS
//