LOCUS AEE83721.1 1164 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana phytochrome D protein. ACCESSION CP002687-2672 PROTEIN_ID AEE83721.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="PHYD" /locus_tag="AT4G16250" /gene_synonym="DL4165C" /gene_synonym="FCAALL.323" /gene_synonym="phytochrome D" /gene_synonym="PHYTOCHROME D" /inference="Similar to RNA sequence, EST:INSD:ES076442.1,INSD:EH880903.1,INSD:EL091764.1, INSD:ES020846.1" /note="phytochrome D (PHYD); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Phytochrome chromophore binding site (InterPro:IPR013516), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 26426 Blast hits to 26152 proteins in 3833 species: Archae - 221; Bacteria - 20797; Metazoa - 4; Fungi - 482; Plants - 3855; Viruses - 5; Other Eukaryotes - 1062 (source: NCBI BLink)." /db_xref="TAIR:AT4G16250" /db_xref="Araport:AT4G16250" intron_pos 726:1 (1/3) intron_pos 995:2 (2/3) intron_pos 1092:2 (3/3) BEGIN 1 MVSGGGSKTS GGEAASSGHR RSRHTSAAEQ AQSSANKALR SQNQQPQNHG GGTESTNKAI 61 QQYTVDARLH AVFEQSGESG KSFDYSQSLK TAPYDSSVPE QQITAYLSRI QRGGYTQPFG 121 CLIAVEESTF TIIGYSENAR EMLGLMSQSV PSIEDKSEVL TIGTDLRSLF KSSSYLLLER 181 AFVAREITLL NPIWIHSNNT GKPFYAILHR VDVGILIDLE PARTEDPALS IAGAVQSQKL 241 AVRAISHLQS LPSGDIKLLC DTVVESVRDL TGYDRVMVYK FHEDEHGEVV AESKRNDLEP 301 YIGLHYPATD IPQASRFLFK QNRVRMIVDC YASPVRVVQD DRLTQFICLV GSTLRAPHGC 361 HAQYMTNMGS IASLAMAVII NGNEEDGNGV NTGGRNSMRL WGLVVCHHTS ARCIPFPLRY 421 ACEFLMQAFG LQLNMELQLA LQVSEKRVLR MQTLLCDMLL RDSPAGIVTQ RPSIMDLVKC 481 NGAAFLYQGK YYPLGVTPTD SQINDIVEWL VANHSDSTGL STDSLGDAGY PRAAALGDAV 541 CGMAVACITK RDFLFWFRSH TEKEIKWGGA KHHPEDKDDG QRMNPRSSFQ TFLEVVKSRC 601 QPWETAEMDA IHSLQLILRD SFKESEAMDS KAAAAGAVQP HGDDMVQQGM QEIGAVAREM 661 VRLIETATVP IFAVDIDGCI NGWNAKIAEL TGLSVEDAMG KSLVRELIYK EYKETVDRLL 721 SCALKGDEGK NVEVKLKTFG SELQGKAMFV VVNACSSKDY LNNIVGVCFV GQDVTGHKIV 781 MDKFINIQGD YKAIIHSPNP LIPPIFAADE NTCCLEWNTA MEKLTGWPRS EVIGKLLVRE 841 VFGSYCRLKG PDALTKFMIV LHNAIGGQDT DKFPFPFFDR KGEFIQALLT LNKRVSIDGK 901 IIGAFCFLQI PSPELQQALE VQRRQESEYF SRRKELAYIF QVIKNPLSGL RFTNSLLEDM 961 DLNEDQKQLL ETSVSCEKQI SKIVGDMDVK SIDDGSFLLE RTEFFIGNVT NAVVSQVMLV 1021 VRERNLQLIR NIPTEVKSMA VYGDQIRLQQ VLAEFLLSIV RYAPMEGSVE LHLCPTLNQM 1081 ADGFSAVRLE FRMACAGEGV PPEKVQDMFH SSRWTSPEGL GLSVCRKILK LMNGGVQYIR 1141 EFERSYFLIV IELPVPLMMM MPSS //