LOCUS AEE83601.1 561 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Ubiquitin fusion degradation UFD1
family protein protein.
ACCESSION CP002687-2510
PROTEIN_ID AEE83601.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G15420"
/gene_synonym="DL3755W"
/gene_synonym="FCAALL.127"
/inference="Similar to RNA sequence,
EST:INSD:BX837634.1,INSD:BP629491.1,INSD:EH963769.1,
INSD:BX837285.1,INSD:BP569386.1,INSD:BP796557.1,
INSD:ES211350.1,INSD:BP567752.1,INSD:BP563955.1,
INSD:BP608223.1,INSD:AV557946.1,INSD:EH895056.1,
INSD:BX838345.1,INSD:ES087053.1,INSD:ES171977.1,
INSD:R86785.1,INSD:EL341110.1,INSD:EL013866.1,
INSD:EH866294.1,INSD:EH987520.1,INSD:BX834338.1,
INSD:BP584172.1,INSD:EL177868.1,INSD:AV814031.1,
INSD:EL974180.1,INSD:EL125943.1,INSD:AV827957.1,
INSD:EH910905.1,INSD:BP602572.1,INSD:BX838934.1,
INSD:EH960071.1,INSD:DR381511.1,INSD:BP797308.1,
INSD:BP563924.1,INSD:BP788033.1,INSD:BX838851.1,
INSD:BX834200.1,INSD:AV566423.1,INSD:EL285572.1,
INSD:DR350916.1,INSD:EH964293.1,INSD:BX837009.1,
INSD:EH971593.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF315735.1,INSD:AY086035.1,INSD:AY143927.1,
INSD:DQ778953.1,INSD:AF446353.1,INSD:BX826908.1"
/note="Ubiquitin fusion degradation UFD1 family protein;
FUNCTIONS IN: peptidase activity, zinc ion binding;
INVOLVED IN: proteolysis, ubiquitin-dependent protein
catabolic process; LOCATED IN: intracellular; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like
(InterPro:IPR015880), Peptidase, C-terminal,
archaeal/bacterial (InterPro:IPR007280), Ubiquitin fusion
degradation protein UFD1 (InterPro:IPR004854); BEST
Arabidopsis thaliana protein match is: Ubiquitin fusion
degradation UFD1 family protein (TAIR:AT2G29070.2); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="TAIR:AT4G15420"
/db_xref="Araport:AT4G15420"
intron_pos 62:0 (1/2)
intron_pos 486:0 (2/2)
BEGIN
1 MDFELRSAKE KLEREQRERK QRAKLKLERE KKSKEAAIKQ REAIEAAQRA RRLDAIEAQI
61 KADQHMQESL VSGDGIVFER VFQAVSFQGN GDKIKLPPSC FTELSDQGAF DKGPLYFELS
121 VVDHADNKKT THSGVLEFTA EDGTIGLPPH VWSNLFSTHD PMDVPLVEIR YIRLPKGSYA
181 KLQPDNLGFS DLPNHKAILE TILRQHATLS LDDVLLVNYG QVSYKLQVLE LRPATSISVL
241 ETDIEVDIVS PDIVSDQPNQ HVLKPLQYGK SESGTVEEGR YDYYKFVIDE ATVEKVMAGS
301 VKVIVKVDVE KVGADTDLYV SKHPVLFPSL NQHEWSSHDV GSKTLILVSK ERALSSGTYS
361 IGVYGFKGTV KYQVSVLVQE SIDGAKVGER AVSSSSDVDT VECRNCKHSI PSRSIALHEV
421 YCSRHNVVCN HHGCGIVLRV EEAKNHLHCE KCGKALQPTE MEKHLKVFHE PLTCGCGIVL
481 EKEQMVQHQG KDCPLRLIAC RFCGDMVEAG NSAADTRDRM RGMSEHESTC GSRTAPCDSC
541 GRSVMLKDMD IHQIAVHGKS S
//