LOCUS AEE83601.1 561 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana Ubiquitin fusion degradation UFD1 family protein protein. ACCESSION CP002687-2510 PROTEIN_ID AEE83601.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /locus_tag="AT4G15420" /gene_synonym="DL3755W" /gene_synonym="FCAALL.127" /inference="Similar to RNA sequence, EST:INSD:BX837634.1,INSD:BP629491.1,INSD:EH963769.1, INSD:BX837285.1,INSD:BP569386.1,INSD:BP796557.1, INSD:ES211350.1,INSD:BP567752.1,INSD:BP563955.1, INSD:BP608223.1,INSD:AV557946.1,INSD:EH895056.1, INSD:BX838345.1,INSD:ES087053.1,INSD:ES171977.1, INSD:R86785.1,INSD:EL341110.1,INSD:EL013866.1, INSD:EH866294.1,INSD:EH987520.1,INSD:BX834338.1, INSD:BP584172.1,INSD:EL177868.1,INSD:AV814031.1, INSD:EL974180.1,INSD:EL125943.1,INSD:AV827957.1, INSD:EH910905.1,INSD:BP602572.1,INSD:BX838934.1, INSD:EH960071.1,INSD:DR381511.1,INSD:BP797308.1, INSD:BP563924.1,INSD:BP788033.1,INSD:BX838851.1, INSD:BX834200.1,INSD:AV566423.1,INSD:EL285572.1, INSD:DR350916.1,INSD:EH964293.1,INSD:BX837009.1, INSD:EH971593.1" /inference="Similar to RNA sequence, mRNA:INSD:AF315735.1,INSD:AY086035.1,INSD:AY143927.1, INSD:DQ778953.1,INSD:AF446353.1,INSD:BX826908.1" /note="Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: proteolysis, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Peptidase, C-terminal, archaeal/bacterial (InterPro:IPR007280), Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G29070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /db_xref="TAIR:AT4G15420" /db_xref="Araport:AT4G15420" intron_pos 62:0 (1/2) intron_pos 486:0 (2/2) BEGIN 1 MDFELRSAKE KLEREQRERK QRAKLKLERE KKSKEAAIKQ REAIEAAQRA RRLDAIEAQI 61 KADQHMQESL VSGDGIVFER VFQAVSFQGN GDKIKLPPSC FTELSDQGAF DKGPLYFELS 121 VVDHADNKKT THSGVLEFTA EDGTIGLPPH VWSNLFSTHD PMDVPLVEIR YIRLPKGSYA 181 KLQPDNLGFS DLPNHKAILE TILRQHATLS LDDVLLVNYG QVSYKLQVLE LRPATSISVL 241 ETDIEVDIVS PDIVSDQPNQ HVLKPLQYGK SESGTVEEGR YDYYKFVIDE ATVEKVMAGS 301 VKVIVKVDVE KVGADTDLYV SKHPVLFPSL NQHEWSSHDV GSKTLILVSK ERALSSGTYS 361 IGVYGFKGTV KYQVSVLVQE SIDGAKVGER AVSSSSDVDT VECRNCKHSI PSRSIALHEV 421 YCSRHNVVCN HHGCGIVLRV EEAKNHLHCE KCGKALQPTE MEKHLKVFHE PLTCGCGIVL 481 EKEQMVQHQG KDCPLRLIAC RFCGDMVEAG NSAADTRDRM RGMSEHESTC GSRTAPCDSC 541 GRSVMLKDMD IHQIAVHGKS S //