LOCUS AEE83344.1 471 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana serine hydroxymethyltransferase 4 protein.
ACCESSION CP002687-2118
PROTEIN_ID AEE83344.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="SHM4"
/locus_tag="AT4G13930"
/gene_synonym="DL3005C"
/gene_synonym="FCAALL.160"
/gene_synonym="serine hydroxymethyltransferase 4"
/gene_synonym="SERINE HYDROXYMETHYLTRANSFERASE 4"
/inference="Similar to RNA sequence,
EST:INSD:BP839036.1,INSD:AV564129.1,INSD:AV520660.1,
INSD:T88604.1,INSD:AV552501.1,INSD:DR265244.1,
INSD:BP840698.1,INSD:AV537597.1,INSD:AV560659.1,
INSD:EH860829.1,INSD:EL216575.1,INSD:AV552568.1,
INSD:DR265243.1,INSD:AV562431.1,INSD:BU635962.1,
INSD:AV527069.1,INSD:EL264214.1,INSD:BP795110.1,
INSD:EH924780.1,INSD:BP779620.1,INSD:BE527976.1,
INSD:EH795617.1,INSD:AV809333.1,INSD:BP860621.1,
INSD:BP569902.1,INSD:BE528985.1,INSD:EH882595.1,
INSD:AV566000.1,INSD:ES050823.1,INSD:BE521881.1,
INSD:AV518569.1,INSD:ES081238.1,INSD:DR265246.1,
INSD:BE524203.1,INSD:AV818086.1,INSD:AV520657.1,
INSD:AV521346.1,INSD:EL033401.1,INSD:BE530619.1,
INSD:AV542626.1,INSD:BP793457.1,INSD:AV525960.1,
INSD:BP561597.1,INSD:EH921507.1,INSD:EL256089.1,
INSD:AV543200.1,INSD:AV525920.1,INSD:ES009081.1,
INSD:AV560713.1,INSD:CF773304.1,INSD:BP785127.1,
INSD:BP786015.1,INSD:AV795902.1,INSD:BE525787.1,
INSD:BE521880.1,INSD:EL185993.1,INSD:BE524669.1,
INSD:AI100508.1,INSD:CB263148.1,INSD:EH830616.1,
INSD:BX835667.1,INSD:AV549565.1,INSD:EH821127.1,
INSD:ES140531.1,INSD:AV535248.1,INSD:EL124859.1,
INSD:BE524049.1,INSD:AI099614.1,INSD:AV551293.1,
INSD:CB259363.1,INSD:ES095128.1,INSD:BP793791.1,
INSD:EL149876.1,INSD:BE526594.1,INSD:DR265242.1,
INSD:BP795092.1,INSD:AV544032.1,INSD:BP573930.1,
INSD:EL031362.1,INSD:ES065314.1,INSD:BP572799.1,
INSD:EL207311.1,INSD:AV566763.1,INSD:AV793658.1,
INSD:AV540946.1,INSD:AV553579.1,INSD:AV552152.1,
INSD:AV828075.1,INSD:AV792895.1,INSD:DR265245.1,
INSD:H76599.1,INSD:AV547190.1,INSD:BP864323.1,
INSD:BP786308.1,INSD:EL269315.1,INSD:DR265250.1,
INSD:EH822114.1,INSD:AV533310.1,INSD:H35954.1,
INSD:BP652805.1,INSD:ES122676.1,INSD:BE527113.1,
INSD:BE520284.1,INSD:EG419562.1,INSD:AV553304.1,
INSD:BP803504.1,INSD:EH804472.1,INSD:EL240976.1,
INSD:AV519950.1,INSD:EL980879.1,INSD:BP814787.1,
INSD:BP824047.1,INSD:BP661615.1,INSD:AV791094.1,
INSD:AV817794.1,INSD:EH907804.1,INSD:EL171175.1,
INSD:AV518595.1,INSD:ES049478.1,INSD:BP780510.1,
INSD:AV562634.1,INSD:ES034981.1,INSD:BP868904.1,
INSD:BP570784.1,INSD:R65281.1,INSD:BE523218.1,
INSD:DR265249.1,INSD:AI992858.1,INSD:AV544100.1,
INSD:BP786871.1,INSD:BP652438.1,INSD:CB258723.1,
INSD:EH878706.1,INSD:BP637816.1,INSD:BP652764.1,
INSD:EL285294.1,INSD:AV546961.1,INSD:EL110573.1,
INSD:DR265248.1,INSD:ES105397.1,INSD:EL264115.1,
INSD:CF652457.1,INSD:AV799813.1,INSD:AV521102.1,
INSD:AV539391.1,INSD:ES134940.1,INSD:ES089747.1,
INSD:BP794013.1,INSD:Z24502.1,INSD:BP648011.1,
INSD:BP846201.1,INSD:CA781687.1,INSD:BX839547.1,
INSD:AV566297.1,INSD:AA067442.1,INSD:DR374514.1,
INSD:AV564431.1,INSD:BP640437.1,INSD:EH849777.1,
INSD:DR265247.1,INSD:AV532935.1,INSD:EL970679.1,
INSD:EH804620.1,INSD:AV793808.1,INSD:EH931734.1,
INSD:BP587890.1,INSD:AV538298.1,INSD:BE522632.1,
INSD:BP639121.1,INSD:EH885890.1,INSD:BP861500.2,
INSD:BP848034.1,INSD:AV542629.1,INSD:AI099636.1,
INSD:CK118222.1,INSD:AV540834.1,INSD:CK118362.1,
INSD:BP789034.1,INSD:BP562052.2,INSD:AV550503.1,
INSD:BE527615.1,INSD:AV805929.1,INSD:ES002278.1,
INSD:AV829940.1,INSD:EH939167.1,INSD:BP789393.1,
INSD:T46523.1,INSD:BP784391.1,INSD:EH946190.1,
INSD:AV542030.1,INSD:BP783414.1,INSD:BP792279.1,
INSD:BP784562.1,INSD:AV535180.1,INSD:BP792203.1,
INSD:AV540548.1,INSD:BP595227.1,INSD:AV518139.1,
INSD:BE520283.1,INSD:CB252221.1,INSD:EH901019.1,
INSD:EL060321.1,INSD:EH838902.1,INSD:AV797318.1,
INSD:BP783488.1,INSD:F14104.1,INSD:DR265251.1,
INSD:AV524741.1,INSD:BP580448.1,INSD:BP782883.1,
INSD:AV559067.1,INSD:BX839226.1,INSD:AV527756.1,
INSD:ES026822.1,INSD:DR265240.1,INSD:AV544353.1,
INSD:EH992227.1,INSD:BP647610.1,INSD:T88275.1,
INSD:BP781996.1,INSD:DR265252.1,INSD:N96405.1,
INSD:EH944301.1,INSD:DR265239.1,INSD:EH805105.1,
INSD:BP825801.1,INSD:AV536042.1,INSD:ES167852.1,
INSD:ES147498.1,INSD:EL331640.1,INSD:BP574362.1,
INSD:AV827131.1,INSD:BP786530.1,INSD:BP564524.1,
INSD:DR265241.1,INSD:AV560680.1,INSD:BP821766.1,
INSD:EL155132.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX827403.1,INSD:AF324991.2,INSD:AK220902.1,
INSD:AY086929.1,INSD:AF361589.1,INSD:AY093987.1"
/note="serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS
IN: pyridoxal phosphate binding, glycine
hydroxymethyltransferase activity, catalytic activity;
INVOLVED IN: response to cadmium ion, glycine metabolic
process, L-serine metabolic process; LOCATED IN: cytosol,
plasma membrane, membrane; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: seedling growth, seed
development stages; CONTAINS InterPro DOMAIN/s: Pyridoxal
phosphate-dependent transferase, major domain
(InterPro:IPR015424), Serine hydroxymethyltransferase,
pyridoxal phosphate binding site (InterPro:IPR019798),
Pyridoxal phosphate-dependent transferase, major region,
subdomain 1 (InterPro:IPR015421), Serine
hydroxymethyltransferase (InterPro:IPR001085); BEST
Arabidopsis thaliana protein match is: Pyridoxal phosphate
(PLP)-dependent transferases superfamily protein
(TAIR:AT4G13890.1); Has 11689 Blast hits to 11661 proteins
in 2862 species: Archae - 259; Bacteria - 6437; Metazoa -
341; Fungi - 289; Plants - 375; Viruses - 6; Other
Eukaryotes - 3982 (source: NCBI BLink)."
/db_xref="TAIR:AT4G13930"
/db_xref="Araport:AT4G13930"
intron_pos 227:0 (1/3)
intron_pos 357:1 (2/3)
intron_pos 391:1 (3/3)
BEGIN
1 MEPVSSWGNT SLVSVDPEIH DLIEKEKRRQ CRGIELIASE NFTSFAVIEA LGSALTNKYS
61 EGIPGNRYYG GNEFIDEIEN LCRSRALEAF HCDPAAWGVN VQPYSGSPAN FAAYTALLQP
121 HDRIMGLDLP SGGHLTHGYY TSGGKKISAT SIYFESLPYK VNFTTGYIDY DKLEEKALDF
181 RPKLLICGGS AYPRDWDYAR FRAIADKVGA LLLCDMAHIS GLVAAQEAAN PFEYCDVVTT
241 TTHKSLRGPR AGMIFYRKGP KPPKKGQPEG AVYDFEDKIN FAVFPALQGG PHNHQIGALA
301 VALKQANTPG FKVYAKQVKA NAVALGNYLM SKGYQIVTNG TENHLVLWDL RPLGLTGNKV
361 EKLCDLCSIT LNKNAVFGDS SALAPGGVRI GAPAMTSRGL VEKDFEQIGE FLSRAVTLTL
421 DIQKTYGKLL KDFNKGLVNN KDLDQLKADV EKFSASYEMP GFLMSEMKYK D
//