LOCUS AEE82716.1 244 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002687-1236
PROTEIN_ID AEE82716.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G09040"
/gene_synonym="F23J3.70"
/gene_synonym="F23J3_70"
/inference="Similar to RNA sequence,
EST:INSD:EH796127.1,INSD:ES150307.1,INSD:EH930786.1,
INSD:EL263641.1,INSD:AV558443.1,INSD:EH819146.1,
INSD:BP641956.1,INSD:EH901091.1,INSD:BP861268.1,
INSD:EL307915.1,INSD:DR278714.1,INSD:DR297582.1,
INSD:ES013009.1,INSD:DR278707.1,INSD:DR380451.1,
INSD:EH795649.1,INSD:EL103075.1,INSD:EH821785.1,
INSD:EH842193.1,INSD:EL032332.1,INSD:AV558108.1,
INSD:EL312517.1,INSD:EH990662.1,INSD:EH949456.1,
INSD:EL021622.1,INSD:ES191221.1,INSD:BP847440.1,
INSD:EL215048.1,INSD:DR297583.1,INSD:BP781533.1,
INSD:EL088233.1,INSD:ES116028.1,INSD:EL334020.1,
INSD:EH907599.1,INSD:EH939450.1,INSD:EL202336.1,
INSD:EH860887.1,INSD:BP631142.1,INSD:DR297584.1,
INSD:EH886130.1,INSD:BP653125.1,INSD:AV441415.1,
INSD:EH935449.1,INSD:EH909491.1,INSD:EL328315.1,
INSD:EL143507.1,INSD:EL205869.1,INSD:DR379091.1,
INSD:DR297585.1,INSD:BP616434.1,INSD:CF773369.1,
INSD:EL044001.1,INSD:EH928262.1,INSD:EL164546.1,
INSD:EH814407.1,INSD:EL053208.1,INSD:EH876787.1,
INSD:EH900449.1,INSD:EL103283.1,INSD:EH896733.1,
INSD:EH806718.1,INSD:EL258051.1,INSD:ES076247.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: RNA
recognition motif, RNP-1 (InterPro:IPR000504),
Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
BEST Arabidopsis thaliana protein match is: RNA-binding
(RRM/RBD/RNP motifs) family protein (TAIR:AT2G35410.1);
Has 1165 Blast hits to 1048 proteins in 88 species: Archae
- 0; Bacteria - 0; Metazoa - 539; Fungi - 16; Plants -
571; Viruses - 0; Other Eukaryotes - 39 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G09040"
/db_xref="Araport:AT4G09040"
intron_pos 31:0 (1/4)
intron_pos 65:0 (2/4)
intron_pos 98:0 (3/4)
intron_pos 195:0 (4/4)
BEGIN
1 MSSPSSRDVS RLNSSKIQKP HFVLLHHNTR ISKTRLIAQN VPWTSTPEDI RSLFEKYGSV
61 IDIEMSMHKK ERNRGLVFIE MASPEEAATA LKSLESCEYE GRRLKVDYAK TKKKKTYAPR
121 ETPSPVPTFN LFVANLAFEA RAKHLKEFFD ADTGNVVSTE VIFHENPRRS SGYGFVSFKT
181 KKQAEAALIE FQGKDFLGRP IRLAKSKQFV KLQAKEGLQP PEEEAEEEPS QSETMTQEHE
241 TPAA
//