LOCUS AEE82518.1 1067 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana damaged DNA binding protein 1A protein.
ACCESSION CP002687-998
PROTEIN_ID AEE82518.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="DDB1A"
/locus_tag="AT4G05420"
/gene_synonym="C6L9.100"
/gene_synonym="C6L9_100"
/gene_synonym="damaged DNA binding protein 1A"
/inference="Similar to RNA sequence,
EST:INSD:AV561919.1,INSD:AV546322.1,INSD:AV560620.1,
INSD:AV556748.1,INSD:EL041250.1,INSD:AV816134.1,
INSD:BP610823.1,INSD:BE522917.1,INSD:AA651152.1,
INSD:BE530261.1,INSD:AI996577.1,INSD:AV796948.1,
INSD:AV830685.1,INSD:AV831445.1,INSD:BP616762.1,
INSD:AV560548.1,INSD:EG424911.1,INSD:EL251902.1,
INSD:AV816071.1,INSD:EG444231.1,INSD:AV523125.1,
INSD:BP609472.1,INSD:AV545832.1,INSD:EG424909.1,
INSD:AV546203.1,INSD:BP807225.1,INSD:EL111256.1,
INSD:EG498878.1,INSD:BP809846.1,INSD:BP810125.1,
INSD:BP862689.2,INSD:AV523535.1,INSD:EL232220.1,
INSD:EG424906.1,INSD:H36022.1,INSD:BP608917.1,
INSD:AV528720.1,INSD:EH865017.1,INSD:AV541852.1,
INSD:BP809089.1,INSD:AA585742.1,INSD:AV521590.1,
INSD:EH880378.1,INSD:T21895.1,INSD:AV812570.1,
INSD:EL042581.1,INSD:BP620764.1,INSD:EH891804.1,
INSD:BP808233.1,INSD:EG525597.1,INSD:EL969811.1,
INSD:AV548513.1,INSD:EG525596.1,INSD:EG498114.1,
INSD:BP782080.1,INSD:AV566258.1,INSD:EH899007.1,
INSD:ES145628.1,INSD:BP602644.1,INSD:AV554821.1,
INSD:BP620012.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK230366.1,INSD:AY074257.1"
/note="damaged DNA binding protein 1A (DDB1A); FUNCTIONS
IN: protein binding, DNA binding; INVOLVED IN: negative
regulation of transcription, negative regulation of
photomorphogenesis; LOCATED IN: nucleus, CUL4 RING
ubiquitin ligase complex; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: WD40 repeat-like-containing domain
(InterPro:IPR011046), Cleavage/polyadenylation specificity
factor, A subunit, C-terminal (InterPro:IPR004871); BEST
Arabidopsis thaliana protein match is: damaged DNA binding
protein 1B (TAIR:AT4G21100.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G05420"
/db_xref="Araport:AT4G05420"
intron_pos 35:2 (1/17)
intron_pos 52:0 (2/17)
intron_pos 72:0 (3/17)
intron_pos 102:2 (4/17)
intron_pos 120:0 (5/17)
intron_pos 136:2 (6/17)
intron_pos 162:0 (7/17)
intron_pos 232:0 (8/17)
intron_pos 267:2 (9/17)
intron_pos 304:0 (10/17)
intron_pos 371:0 (11/17)
intron_pos 443:0 (12/17)
intron_pos 480:0 (13/17)
intron_pos 572:0 (14/17)
intron_pos 663:2 (15/17)
intron_pos 780:0 (16/17)
intron_pos 875:0 (17/17)
BEGIN
1 MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG
61 RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI TRAMGDVSDR IGRPTDNGQV
121 IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD
181 FVEGPWSQNS LDNGADLLIP VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV
241 DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG
301 DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV
361 VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF ISETRILAMN LEDELEETEI
421 EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV
481 LLATGGGHLV YLEIGDGKLT EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR
541 IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK
601 KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF
661 PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ EQTRTFGICS LGNQSNSEES
721 EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG
781 RILVFIVEDG RLQLIAEKET KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE
841 CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD
901 DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG
961 QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK GVGGLSHEQW RSFNNEKRTA
1021 EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH
//