LOCUS AEE82518.1 1067 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana damaged DNA binding protein 1A protein. ACCESSION CP002687-998 PROTEIN_ID AEE82518.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="DDB1A" /locus_tag="AT4G05420" /gene_synonym="C6L9.100" /gene_synonym="C6L9_100" /gene_synonym="damaged DNA binding protein 1A" /inference="Similar to RNA sequence, EST:INSD:AV561919.1,INSD:AV546322.1,INSD:AV560620.1, INSD:AV556748.1,INSD:EL041250.1,INSD:AV816134.1, INSD:BP610823.1,INSD:BE522917.1,INSD:AA651152.1, INSD:BE530261.1,INSD:AI996577.1,INSD:AV796948.1, INSD:AV830685.1,INSD:AV831445.1,INSD:BP616762.1, INSD:AV560548.1,INSD:EG424911.1,INSD:EL251902.1, INSD:AV816071.1,INSD:EG444231.1,INSD:AV523125.1, INSD:BP609472.1,INSD:AV545832.1,INSD:EG424909.1, INSD:AV546203.1,INSD:BP807225.1,INSD:EL111256.1, INSD:EG498878.1,INSD:BP809846.1,INSD:BP810125.1, INSD:BP862689.2,INSD:AV523535.1,INSD:EL232220.1, INSD:EG424906.1,INSD:H36022.1,INSD:BP608917.1, INSD:AV528720.1,INSD:EH865017.1,INSD:AV541852.1, INSD:BP809089.1,INSD:AA585742.1,INSD:AV521590.1, INSD:EH880378.1,INSD:T21895.1,INSD:AV812570.1, INSD:EL042581.1,INSD:BP620764.1,INSD:EH891804.1, INSD:BP808233.1,INSD:EG525597.1,INSD:EL969811.1, INSD:AV548513.1,INSD:EG525596.1,INSD:EG498114.1, INSD:BP782080.1,INSD:AV566258.1,INSD:EH899007.1, INSD:ES145628.1,INSD:BP602644.1,INSD:AV554821.1, INSD:BP620012.1" /inference="Similar to RNA sequence, mRNA:INSD:AK230366.1,INSD:AY074257.1" /note="damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /db_xref="TAIR:AT4G05420" /db_xref="Araport:AT4G05420" intron_pos 35:2 (1/17) intron_pos 52:0 (2/17) intron_pos 72:0 (3/17) intron_pos 102:2 (4/17) intron_pos 120:0 (5/17) intron_pos 136:2 (6/17) intron_pos 162:0 (7/17) intron_pos 232:0 (8/17) intron_pos 267:2 (9/17) intron_pos 304:0 (10/17) intron_pos 371:0 (11/17) intron_pos 443:0 (12/17) intron_pos 480:0 (13/17) intron_pos 572:0 (14/17) intron_pos 663:2 (15/17) intron_pos 780:0 (16/17) intron_pos 875:0 (17/17) BEGIN 1 MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG 61 RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI TRAMGDVSDR IGRPTDNGQV 121 IPFDNKGQLK EAFNIRLEEL QVLDIKFLFG CAKPTIAVLY QDNKDARHVK TYEVSLKDKD 181 FVEGPWSQNS LDNGADLLIP VPPPLCGVLI IGEETIVYCS ASAFKAIPIR PSITKAYGRV 241 DVDGSRYLLG DHAGMIHLLV ITHEKEKVTG LKIELLGETS IASTISYLDN AVVFVGSSYG 301 DSQLVKLNLH PDAKGSYVEV LERYINLGPI VDFCVVDLER QGQGQVVTCS GAFKDGSLRV 361 VRNGIGINEQ ASVELQGIKG MWSLKSSIDE AFDTFLVVSF ISETRILAMN LEDELEETEI 421 EGFLSQVQTL FCHDAVYNQL VQVTSNSVRL VSSTTRELRD EWHAPAGFTV NVATANASQV 481 LLATGGGHLV YLEIGDGKLT EVQHALLEYE VSCLDINPIG DNPNYSQLAA VGMWTDISVR 541 IFSLPELTLI TKEQLGGEII PRSVLLCAFE GISYLLCALG DGHLLNFQMD TTTGQLKDRK 601 KVSLGTQPIT LRTFSSKSAT HVFAASDRPT VIYSSNKKLL YSNVNLKEVS HMCPFNSAAF 661 PDSLAIAREG ELTIGTIDDI QKLHIRTIPL GEHARRICHQ EQTRTFGICS LGNQSNSEES 721 EMHFVRLLDD QTFEFMSTYP LDSFEYGCSI LSCSFTEDKN VYYCVGTAYV LPEENEPTKG 781 RILVFIVEDG RLQLIAEKET KGAVYSLNAF NGKLLAAINQ KIQLYKWMLR DDGTRELQSE 841 CGHHGHILAL YVQTRGDFIV VGDLMKSISL LLYKHEEGAI EERARDYNAN WMSAVEILDD 901 DIYLGAENNF NLLTVKKNSE GATDEERGRL EVVGEYHLGE FVNRFRHGSL VMRLPDSEIG 961 QIPTVIFGTV NGVIGVIASL PQEQYTFLEK LQSSLRKVIK GVGGLSHEQW RSFNNEKRTA 1021 EARNFLDGDL IESFLDLSRN KMEDISKSMN VQVEELCKRV EELTRLH //