LOCUS AEE82517.1 1088 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana damaged DNA binding protein 1A protein.
ACCESSION CP002687-997
PROTEIN_ID AEE82517.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="DDB1A"
/locus_tag="AT4G05420"
/gene_synonym="C6L9.100"
/gene_synonym="C6L9_100"
/gene_synonym="damaged DNA binding protein 1A"
/inference="Similar to RNA sequence,
EST:INSD:AV561919.1,INSD:AV546322.1,INSD:EG424907.1,
INSD:AV560620.1,INSD:AV556748.1,INSD:EL041250.1,
INSD:AV816134.1,INSD:BP610823.1,INSD:BE522917.1,
INSD:AA651152.1,INSD:BE530261.1,INSD:AI996577.1,
INSD:AV796948.1,INSD:AV830685.1,INSD:AV831445.1,
INSD:BP616762.1,INSD:AV560548.1,INSD:EG424911.1,
INSD:EL251902.1,INSD:AV816071.1,INSD:AV831466.1,
INSD:EG444231.1,INSD:AV523125.1,INSD:EG498877.1,
INSD:BP609472.1,INSD:AV545832.1,INSD:EG424909.1,
INSD:EG498110.1,INSD:AV546203.1,INSD:BP807225.1,
INSD:EG424910.1,INSD:EL111256.1,INSD:EG498878.1,
INSD:BP809846.1,INSD:BP810125.1,INSD:AV523535.1,
INSD:BP862689.2,INSD:EL232220.1,INSD:EG424906.1,
INSD:H36022.1,INSD:AV528720.1,INSD:BP608917.1,
INSD:EG424905.1,INSD:EH865017.1,INSD:AV541852.1,
INSD:BP809089.1,INSD:AV521590.1,INSD:BE038322.1,
INSD:AA585742.1,INSD:AV529228.1,INSD:EH880378.1,
INSD:T21895.1,INSD:EL042581.1,INSD:AV812570.1,
INSD:BP620764.1,INSD:BP808233.1,INSD:EH891804.1,
INSD:EG525597.1,INSD:EL969811.1,INSD:AV548513.1,
INSD:EG498114.1,INSD:AV826987.1,INSD:AV546967.1,
INSD:BP782080.1,INSD:AV566258.1,INSD:EH899007.1,
INSD:ES145628.1,INSD:BP602644.1,INSD:AV554821.1,
INSD:BP620012.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT001905.1,INSD:AY074258.1,INSD:AK230366.1,
INSD:AY074257.1"
/note="damaged DNA binding protein 1A (DDB1A); FUNCTIONS
IN: protein binding, DNA binding; INVOLVED IN: negative
regulation of transcription, negative regulation of
photomorphogenesis; LOCATED IN: nucleus, CUL4 RING
ubiquitin ligase complex; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: WD40 repeat-like-containing domain
(InterPro:IPR011046), Cleavage/polyadenylation specificity
factor, A subunit, C-terminal (InterPro:IPR004871); BEST
Arabidopsis thaliana protein match is: damaged DNA binding
protein 1B (TAIR:AT4G21100.1); Has 1490 Blast hits to 1182
proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa
- 604; Fungi - 374; Plants - 231; Viruses - 0; Other
Eukaryotes - 281 (source: NCBI BLink)."
/db_xref="TAIR:AT4G05420"
/db_xref="Araport:AT4G05420"
intron_pos 35:2 (1/18)
intron_pos 52:0 (2/18)
intron_pos 72:0 (3/18)
intron_pos 102:2 (4/18)
intron_pos 120:0 (5/18)
intron_pos 141:0 (6/18)
intron_pos 157:2 (7/18)
intron_pos 183:0 (8/18)
intron_pos 253:0 (9/18)
intron_pos 288:2 (10/18)
intron_pos 325:0 (11/18)
intron_pos 392:0 (12/18)
intron_pos 464:0 (13/18)
intron_pos 501:0 (14/18)
intron_pos 593:0 (15/18)
intron_pos 684:2 (16/18)
intron_pos 801:0 (17/18)
intron_pos 896:0 (18/18)
BEGIN
1 MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG
61 RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI TRAMGDVSDR IGRPTDNGQI
121 GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL
181 YQDNKDARHV KTYEVSLKDK DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC
241 SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET
301 SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE
361 RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK GMWSLKSSID EAFDTFLVVS
421 FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR
481 DEWHAPAGFT VNVATANASQ VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI
541 GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL
601 GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL
661 LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP LGEHARRICH
721 QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK
781 NVYYCVGTAY VLPEENEPTK GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN
841 QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA
901 IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG
961 EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS LPQEQYTFLE KLQSSLRKVI
1021 KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR
1081 VEELTRLH
//