LOCUS AEE82517.1 1088 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana damaged DNA binding protein 1A protein. ACCESSION CP002687-997 PROTEIN_ID AEE82517.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="DDB1A" /locus_tag="AT4G05420" /gene_synonym="C6L9.100" /gene_synonym="C6L9_100" /gene_synonym="damaged DNA binding protein 1A" /inference="Similar to RNA sequence, EST:INSD:AV561919.1,INSD:AV546322.1,INSD:EG424907.1, INSD:AV560620.1,INSD:AV556748.1,INSD:EL041250.1, INSD:AV816134.1,INSD:BP610823.1,INSD:BE522917.1, INSD:AA651152.1,INSD:BE530261.1,INSD:AI996577.1, INSD:AV796948.1,INSD:AV830685.1,INSD:AV831445.1, INSD:BP616762.1,INSD:AV560548.1,INSD:EG424911.1, INSD:EL251902.1,INSD:AV816071.1,INSD:AV831466.1, INSD:EG444231.1,INSD:AV523125.1,INSD:EG498877.1, INSD:BP609472.1,INSD:AV545832.1,INSD:EG424909.1, INSD:EG498110.1,INSD:AV546203.1,INSD:BP807225.1, INSD:EG424910.1,INSD:EL111256.1,INSD:EG498878.1, INSD:BP809846.1,INSD:BP810125.1,INSD:AV523535.1, INSD:BP862689.2,INSD:EL232220.1,INSD:EG424906.1, INSD:H36022.1,INSD:AV528720.1,INSD:BP608917.1, INSD:EG424905.1,INSD:EH865017.1,INSD:AV541852.1, INSD:BP809089.1,INSD:AV521590.1,INSD:BE038322.1, INSD:AA585742.1,INSD:AV529228.1,INSD:EH880378.1, INSD:T21895.1,INSD:EL042581.1,INSD:AV812570.1, INSD:BP620764.1,INSD:BP808233.1,INSD:EH891804.1, INSD:EG525597.1,INSD:EL969811.1,INSD:AV548513.1, INSD:EG498114.1,INSD:AV826987.1,INSD:AV546967.1, INSD:BP782080.1,INSD:AV566258.1,INSD:EH899007.1, INSD:ES145628.1,INSD:BP602644.1,INSD:AV554821.1, INSD:BP620012.1" /inference="Similar to RNA sequence, mRNA:INSD:BT001905.1,INSD:AY074258.1,INSD:AK230366.1, INSD:AY074257.1" /note="damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 1490 Blast hits to 1182 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 374; Plants - 231; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink)." /db_xref="TAIR:AT4G05420" /db_xref="Araport:AT4G05420" intron_pos 35:2 (1/18) intron_pos 52:0 (2/18) intron_pos 72:0 (3/18) intron_pos 102:2 (4/18) intron_pos 120:0 (5/18) intron_pos 141:0 (6/18) intron_pos 157:2 (7/18) intron_pos 183:0 (8/18) intron_pos 253:0 (9/18) intron_pos 288:2 (10/18) intron_pos 325:0 (11/18) intron_pos 392:0 (12/18) intron_pos 464:0 (13/18) intron_pos 501:0 (14/18) intron_pos 593:0 (15/18) intron_pos 684:2 (16/18) intron_pos 801:0 (17/18) intron_pos 896:0 (18/18) BEGIN 1 MSSWNYVVTA HKPTSVTHSC VGNFTSPQEL NLIVAKCTRI EIHLLTPQGL QPMLDVPIYG 61 RIATLELFRP HGEAQDFLFI ATERYKFCVL QWDPESSELI TRAMGDVSDR IGRPTDNGQI 121 GIIDPDCRLI GLHLYDGLFK VIPFDNKGQL KEAFNIRLEE LQVLDIKFLF GCAKPTIAVL 181 YQDNKDARHV KTYEVSLKDK DFVEGPWSQN SLDNGADLLI PVPPPLCGVL IIGEETIVYC 241 SASAFKAIPI RPSITKAYGR VDVDGSRYLL GDHAGMIHLL VITHEKEKVT GLKIELLGET 301 SIASTISYLD NAVVFVGSSY GDSQLVKLNL HPDAKGSYVE VLERYINLGP IVDFCVVDLE 361 RQGQGQVVTC SGAFKDGSLR VVRNGIGINE QASVELQGIK GMWSLKSSID EAFDTFLVVS 421 FISETRILAM NLEDELEETE IEGFLSQVQT LFCHDAVYNQ LVQVTSNSVR LVSSTTRELR 481 DEWHAPAGFT VNVATANASQ VLLATGGGHL VYLEIGDGKL TEVQHALLEY EVSCLDINPI 541 GDNPNYSQLA AVGMWTDISV RIFSLPELTL ITKEQLGGEI IPRSVLLCAF EGISYLLCAL 601 GDGHLLNFQM DTTTGQLKDR KKVSLGTQPI TLRTFSSKSA THVFAASDRP TVIYSSNKKL 661 LYSNVNLKEV SHMCPFNSAA FPDSLAIARE GELTIGTIDD IQKLHIRTIP LGEHARRICH 721 QEQTRTFGIC SLGNQSNSEE SEMHFVRLLD DQTFEFMSTY PLDSFEYGCS ILSCSFTEDK 781 NVYYCVGTAY VLPEENEPTK GRILVFIVED GRLQLIAEKE TKGAVYSLNA FNGKLLAAIN 841 QKIQLYKWML RDDGTRELQS ECGHHGHILA LYVQTRGDFI VVGDLMKSIS LLLYKHEEGA 901 IEERARDYNA NWMSAVEILD DDIYLGAENN FNLLTVKKNS EGATDEERGR LEVVGEYHLG 961 EFVNRFRHGS LVMRLPDSEI GQIPTVIFGT VNGVIGVIAS LPQEQYTFLE KLQSSLRKVI 1021 KGVGGLSHEQ WRSFNNEKRT AEARNFLDGD LIESFLDLSR NKMEDISKSM NVQVEELCKR 1081 VEELTRLH //