LOCUS AEE82445.1 910 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana transducin family protein / WD-40
repeat family protein protein.
ACCESSION CP002687-899
PROTEIN_ID AEE82445.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G04940"
/gene_synonym="T1J1.5"
/gene_synonym="T1J1_5"
/inference="Similar to RNA sequence,
EST:INSD:BX841453.1,INSD:BP780172.1,INSD:BP783386.1,
INSD:AV791840.1,INSD:BP777205.1,INSD:BX841454.1,
INSD:EL314633.1,INSD:EL075775.1,INSD:AV790770.1,
INSD:BP588189.1,INSD:BP780969.1,INSD:BP777718.1,
INSD:BP789715.1,INSD:BP783754.1,INSD:BP785890.1,
INSD:BP777377.1,INSD:EL000743.1,INSD:CB255076.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY059784.1,INSD:AY096634.1"
/note="transducin family protein / WD-40 repeat family
protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN:
rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase
complex; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40
repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site
(InterPro:IPR019775), WD40 repeat (InterPro:IPR001680),
WD40 repeat-like-containing domain (InterPro:IPR011046),
WD40-repeat-containing domain (InterPro:IPR017986),
Small-subunit processome, Utp21 (InterPro:IPR007319),
WD40/YVTN repeat-like-containing domain
(InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: Transducin/WD40 repeat-like superfamily protein
(TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G04940"
/db_xref="Araport:AT4G04940"
intron_pos 43:0 (1/17)
intron_pos 52:1 (2/17)
intron_pos 86:0 (3/17)
intron_pos 154:0 (4/17)
intron_pos 235:1 (5/17)
intron_pos 294:0 (6/17)
intron_pos 321:2 (7/17)
intron_pos 346:0 (8/17)
intron_pos 368:0 (9/17)
intron_pos 382:1 (10/17)
intron_pos 429:0 (11/17)
intron_pos 500:0 (12/17)
intron_pos 528:1 (13/17)
intron_pos 626:2 (14/17)
intron_pos 715:0 (15/17)
intron_pos 790:1 (16/17)
intron_pos 862:0 (17/17)
BEGIN
1 MGIFEPFRAI GYITSTVPFS VQRLGTETFV TVSVGKAFQI YNCAKLNLVI ISPQLPKKIR
61 ALASYRDYTF VAFGNEIAVF RRAHQVATWS KHVAKVDLLL VFGEHVLSLD VEGNMFIWAF
121 KGIEEHLAPI GNLQLTGKFT PTSIVHPDTY LNKVLVGSQE GPLQLWNINT KKMLYQFKGW
181 GSSVTSCVSS PALDVVAIGC ADGKIHVHNI KLDEEIVTFE HASRGAVTAL SFSTDGRPLL
241 ASGGSFGVIS IWNLNKKRLQ SVIRDAHDSS IISLNFLANE PVLMSASADN SLKMWIFDTN
301 DGDPRLLRFR SGHSAPPLCI RFYSNGRHIL SAGQDRAFRL FSVIQEQQSR ELSQRHISRR
361 AKKLRLKEEE LKLKPVVSFD CAEIRERDWC NVVTCHMDTA EAYVWRLQNF VLGEHILKPC
421 PENPTPIKAC AISACGNFAV VGTAGGWIER FNLQSGISRG SYFDMSEKRR YAHDGEVIGV
481 ACDSTNTLMI SAGYHGDLKV WDFKKRELKS QWDVGCSLVK IVYHRVNGLL ATVADDFVIR
541 LYDVVTLKMV REFRGHTDRI TDLCFSEDGK WVISSSMDGS LRIWDVILAK QIDGVHVDVP
601 ITALSLSPNM DVLATAHSDQ NGVYLWVNQS MFSGLPSVES YASGKDVVNV KLPSVSALTS
661 SEADDDMDRQ VLENSEALQA SSFSISQKQI PELVTLSLLP KSQWQSLINL DIIKARNKPI
721 EPPKKPEKAP FFLPSIPSLS GDILFKANDS EADGENEENN KKDQNSMKNF DALESPFSKH
781 LKSSWDSKHF LDFTNYMKSL SPSALDMELR MLEIIDEDVE EELIKRPEFI LIGQLLDYFI
841 NEVSCKNDFE FMQAVVKLFL KIHGETIRCH PSLQEKAKKL LETQSLVWQK MEKLFQSTRC
901 IVTFLSNSQF
//