LOCUS AEE82445.1 910 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana transducin family protein / WD-40 repeat family protein protein. ACCESSION CP002687-899 PROTEIN_ID AEE82445.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /locus_tag="AT4G04940" /gene_synonym="T1J1.5" /gene_synonym="T1J1_5" /inference="Similar to RNA sequence, EST:INSD:BX841453.1,INSD:BP780172.1,INSD:BP783386.1, INSD:AV791840.1,INSD:BP777205.1,INSD:BX841454.1, INSD:EL314633.1,INSD:EL075775.1,INSD:AV790770.1, INSD:BP588189.1,INSD:BP780969.1,INSD:BP777718.1, INSD:BP789715.1,INSD:BP783754.1,INSD:BP785890.1, INSD:BP777377.1,INSD:EL000743.1,INSD:CB255076.1" /inference="Similar to RNA sequence, mRNA:INSD:AY059784.1,INSD:AY096634.1" /note="transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /db_xref="TAIR:AT4G04940" /db_xref="Araport:AT4G04940" intron_pos 43:0 (1/17) intron_pos 52:1 (2/17) intron_pos 86:0 (3/17) intron_pos 154:0 (4/17) intron_pos 235:1 (5/17) intron_pos 294:0 (6/17) intron_pos 321:2 (7/17) intron_pos 346:0 (8/17) intron_pos 368:0 (9/17) intron_pos 382:1 (10/17) intron_pos 429:0 (11/17) intron_pos 500:0 (12/17) intron_pos 528:1 (13/17) intron_pos 626:2 (14/17) intron_pos 715:0 (15/17) intron_pos 790:1 (16/17) intron_pos 862:0 (17/17) BEGIN 1 MGIFEPFRAI GYITSTVPFS VQRLGTETFV TVSVGKAFQI YNCAKLNLVI ISPQLPKKIR 61 ALASYRDYTF VAFGNEIAVF RRAHQVATWS KHVAKVDLLL VFGEHVLSLD VEGNMFIWAF 121 KGIEEHLAPI GNLQLTGKFT PTSIVHPDTY LNKVLVGSQE GPLQLWNINT KKMLYQFKGW 181 GSSVTSCVSS PALDVVAIGC ADGKIHVHNI KLDEEIVTFE HASRGAVTAL SFSTDGRPLL 241 ASGGSFGVIS IWNLNKKRLQ SVIRDAHDSS IISLNFLANE PVLMSASADN SLKMWIFDTN 301 DGDPRLLRFR SGHSAPPLCI RFYSNGRHIL SAGQDRAFRL FSVIQEQQSR ELSQRHISRR 361 AKKLRLKEEE LKLKPVVSFD CAEIRERDWC NVVTCHMDTA EAYVWRLQNF VLGEHILKPC 421 PENPTPIKAC AISACGNFAV VGTAGGWIER FNLQSGISRG SYFDMSEKRR YAHDGEVIGV 481 ACDSTNTLMI SAGYHGDLKV WDFKKRELKS QWDVGCSLVK IVYHRVNGLL ATVADDFVIR 541 LYDVVTLKMV REFRGHTDRI TDLCFSEDGK WVISSSMDGS LRIWDVILAK QIDGVHVDVP 601 ITALSLSPNM DVLATAHSDQ NGVYLWVNQS MFSGLPSVES YASGKDVVNV KLPSVSALTS 661 SEADDDMDRQ VLENSEALQA SSFSISQKQI PELVTLSLLP KSQWQSLINL DIIKARNKPI 721 EPPKKPEKAP FFLPSIPSLS GDILFKANDS EADGENEENN KKDQNSMKNF DALESPFSKH 781 LKSSWDSKHF LDFTNYMKSL SPSALDMELR MLEIIDEDVE EELIKRPEFI LIGQLLDYFI 841 NEVSCKNDFE FMQAVVKLFL KIHGETIRCH PSLQEKAKKL LETQSLVWQK MEKLFQSTRC 901 IVTFLSNSQF //