LOCUS AEE82273.1 439 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding protein-defense related 1 protein.
ACCESSION CP002687-639
PROTEIN_ID AEE82273.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="RBP-DR1"
/locus_tag="AT4G03110"
/gene_synonym="AtBRN1"
/gene_synonym="AtRBP-DR1"
/gene_synonym="BRN1"
/gene_synonym="Bruno-like 1"
/gene_synonym="F4C21.3"
/gene_synonym="RNA-binding protein-defense related 1"
/inference="Similar to RNA sequence,
EST:INSD:EH933975.1,INSD:EL197954.1,INSD:EH845959.1,
INSD:EH972640.1,INSD:EL020171.1,INSD:EL108958.1,
INSD:EH894538.1,INSD:BP671890.1,INSD:EL304160.1,
INSD:EL216775.1,INSD:BP823566.1,INSD:ES015150.1,
INSD:EL112582.1,INSD:EH843434.1,INSD:EL269201.1,
INSD:EL252032.1,INSD:EL302001.1,INSD:EH958008.1,
INSD:EL121081.1,INSD:EL174303.1,INSD:BP662713.1,
INSD:EH984578.1,INSD:EL224411.1,INSD:EL136483.1,
INSD:EL217061.1,INSD:EL083495.1,INSD:EL221589.1,
INSD:EH801777.1,INSD:BP668382.1,INSD:EL252694.1,
INSD:EL330500.1,INSD:CK117649.1,INSD:EH902069.1,
INSD:EL149472.1,INSD:EL230990.1,INSD:EH878356.1,
INSD:EL063164.1,INSD:EL113455.1,INSD:EL221607.1,
INSD:EH978006.1,INSD:EH869776.1,INSD:EH865820.1,
INSD:EH886332.1,INSD:EL164684.1,INSD:EH907206.1,
INSD:EL240442.1,INSD:AV803654.1,INSD:EL243744.1,
INSD:DR285815.1,INSD:EL007155.1,INSD:EL178366.1,
INSD:BP814783.1,INSD:EL261072.1,INSD:BP862681.1,
INSD:N38571.1,INSD:AV828970.1,INSD:ES158561.1,
INSD:EL118392.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY065261.1"
/note="RNA-binding protein-defense related 1 (RBP-DR1);
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: plant-type hypersensitive
response, positive regulation of salicylic acid mediated
signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Ribonucleoprotein, BRUNO-like
(InterPro:IPR015903), Paraneoplastic encephalomyelitis
antigen (InterPro:IPR002343), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA-binding (RRM/RBD/RNP
motifs) family protein (TAIR:AT1G03457.1); Has 16162 Blast
hits to 12321 proteins in 473 species: Archae - 8;
Bacteria - 251; Metazoa - 10325; Fungi - 1647; Plants -
2258; Viruses - 0; Other Eukaryotes - 1673 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G03110"
/db_xref="Araport:AT4G03110"
intron_pos 60:1 (1/7)
intron_pos 88:0 (2/7)
intron_pos 105:1 (3/7)
intron_pos 147:1 (4/7)
intron_pos 174:0 (5/7)
intron_pos 234:0 (6/7)
intron_pos 344:1 (7/7)
BEGIN
1 MAEAKEENRE KNEEEESVKL FVGQIPKHMS ESQLLTLFQE FAVVDEVNII KDKITRASRG
61 CCFLLCPSRE EADKLVNACH NKKTLPGANS LLQVKYADGE LERLEHKLFV GMLPKNVSEA
121 EVQSLFSKYG TIKDLQILRG AQQTSKGCAF LKYETKEQAV SAMESINGKH KMEGSTVPLV
181 VKWADTERER HTRRLQKAQS HIARLGNGDP TNPSLFGALP MGYVPPYNGY GYHPPGTYGY
241 MLPPIQNQAA FSNMIAQPNQ GNNNALQGTS PDSVPPRLAR RNFPMPPGNY MGSGYPAMRG
301 HPFPFAYPRG IVSPRPLSSS PGSISPGMST PLGIGLSSVV QTEGPEGANL FIYNIPREFG
361 DQELAAAFQS FGIVLSAKVF VDKATGVSKC FGKLSFDLVF PLLKLVHCEG RKKAFFCCCC
421 WLQVLLAMTH KPRRRTLLT
//