LOCUS AEE80446.1 275 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana ribosome recycling factor, chloroplast
precursor protein.
ACCESSION CP002686-9393
PROTEIN_ID AEE80446.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RRF"
/locus_tag="AT3G63190"
/gene_synonym="''ribosome recycling factor"
/gene_synonym="Arabidopsis thaliana chloroplast ribosome
recycling factor"
/gene_synonym="AtcpRRF"
/gene_synonym="chloroplast precursor"
/gene_synonym="chloroplast precursor''"
/gene_synonym="chloroplast ribosome recycling factor"
/gene_synonym="cpRRF"
/gene_synonym="HFP108"
/gene_synonym="HIGH CHLOROPHYLL FLUORESCENCE AND PALE
GREEN MUTANT 108"
/gene_synonym="ribosome recycling factor"
/inference="Similar to RNA sequence,
EST:INSD:DR322151.1,INSD:BP844559.1,INSD:BP646177.1,
INSD:EL113889.1,INSD:EL102525.1,INSD:EL229497.1,
INSD:EH889533.1,INSD:EL010114.1,INSD:DR226297.1,
INSD:EL245113.1,INSD:EL033933.1,INSD:EL278715.1,
INSD:BP857458.1,INSD:DR322145.1,INSD:BP832506.1,
INSD:EH886769.1,INSD:EL142529.1,INSD:BP851742.1,
INSD:EH797250.1,INSD:BX840964.1,INSD:EG463105.1,
INSD:AV796240.1,INSD:EL153166.1,INSD:EH901634.1,
INSD:EL250887.1,INSD:EL218616.1,INSD:BP825896.1,
INSD:DR322139.1,INSD:DR322150.1,INSD:DR372970.1,
INSD:EG514652.1,INSD:EH834904.1,INSD:EH891722.1,
INSD:ES172964.1,INSD:EL166349.1,INSD:DR322136.1,
INSD:EG463099.1,INSD:EG463098.1,INSD:AV826778.1,
INSD:EL969758.1,INSD:BP865800.1,INSD:EH976328.1,
INSD:ES209178.1,INSD:ES031610.1,INSD:DR322148.1,
INSD:BP650627.1,INSD:BP851358.1,INSD:BP814007.1,
INSD:DR322138.1,INSD:EL140711.1,INSD:ES005740.1,
INSD:EL286566.1,INSD:DR322141.1,INSD:EL284980.1,
INSD:EH983607.1,INSD:BP855446.1,INSD:BP852426.1,
INSD:DR322142.1,INSD:DR322152.1,INSD:ES137282.1,
INSD:EL012863.1,INSD:AV826153.1,INSD:DR322137.1,
INSD:EL113749.1,INSD:EL086084.1,INSD:EH960377.1,
INSD:BP663000.1,INSD:EL205711.1,INSD:DR322154.1,
INSD:DR322144.1,INSD:AV787764.1,INSD:BP665722.1,
INSD:DR322153.1,INSD:BP823481.1,INSD:BP664301.1,
INSD:DR322133.1,INSD:EL040005.1,INSD:EL284687.1,
INSD:AV566107.1,INSD:BP622057.1,INSD:EH827572.1,
INSD:DR322135.1,INSD:EH957509.1,INSD:BP816525.1,
INSD:AV807685.1,INSD:BP840748.1,INSD:AI998453.1,
INSD:BP824987.1,INSD:DR322143.1,INSD:EL049234.1,
INSD:EG463106.1,INSD:AV521528.1,INSD:EL033188.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF372883.1,INSD:BT002678.1,INSD:BX825146.1,
INSD:AY092982.1,INSD:AY056778.1"
/note="''ribosome recycling factor, chloroplast
precursor'' (RRF); FUNCTIONS IN: copper ion binding;
INVOLVED IN: in 6 processes; LOCATED IN: thylakoid,
chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Ribosome recycling factor,
bacterial-like (InterPro:IPR015998), Ribosome recycling
factor (InterPro:IPR002661); BEST Arabidopsis thaliana
protein match is: Ribosome recycling factor
(TAIR:AT3G01800.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G63190"
/db_xref="Araport:AT3G63190"
intron_pos 30:1 (1/10)
intron_pos 77:2 (2/10)
intron_pos 100:0 (3/10)
intron_pos 132:0 (4/10)
intron_pos 164:2 (5/10)
intron_pos 202:0 (6/10)
intron_pos 216:0 (7/10)
intron_pos 235:0 (8/10)
intron_pos 252:0 (9/10)
intron_pos 271:0 (10/10)
BEGIN
1 MAASFSSTAP TTPVLRFRAN YSKPLLSLPD SCLRIISSAI SPSTRLIACS FKTDKLPLGA
61 GVNLSGGPVV KRSLQKRLVI RSATIEEIEA EKSAIETDVK SKMEKTIETL RTSFNSIRTG
121 RSNAAMLDKI EVEYYGSPVS LKSIAQISTP DGSSLLLQPY DKSSLKAIEK AIVNSDLGVT
181 PNNDGDVIRL SLPPLTSDRR KELSKVVAKQ SEEGKVALRN IRRDALKSYD KLEKEKKLSE
241 DNVKDLSSDL QKLIDVYMKK IEELYKQKEK ELMKV
//