LOCUS AEE79944.1 146 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA polymerase Rpb8 protein.
ACCESSION CP002686-8722
PROTEIN_ID AEE79944.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="NRPB8B"
/locus_tag="AT3G59600"
/gene_synonym="NRPD8B"
/gene_synonym="NRPE8B"
/inference="Similar to RNA sequence,
EST:INSD:BX838361.1,INSD:EH842759.1,INSD:EL077369.1,
INSD:ES117930.1,INSD:DR199593.1,INSD:EL981582.1,
INSD:DR199597.1,INSD:ES111262.1,INSD:AV535613.1,
INSD:DR372627.1,INSD:BP631064.1,INSD:DR199598.1,
INSD:EL318829.1,INSD:DR199600.1,INSD:AU239898.1,
INSD:BP832542.1,INSD:DR251858.1,INSD:DR199594.1,
INSD:BP816602.1,INSD:DR199601.1,INSD:EL998236.1,
INSD:EL147320.1,INSD:DR251860.1,INSD:DR375670.1,
INSD:DR251857.1,INSD:DR373208.1,INSD:DR199599.1,
INSD:BP825533.1,INSD:EH907204.1,INSD:ES069862.1,
INSD:DR199602.1,INSD:DR251859.1,INSD:ES074806.1,
INSD:EL337310.1,INSD:ES144028.1,INSD:DR199596.1,
INSD:DR199595.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX826263.1,INSD:AY086002.1,INSD:AK119016.1,
INSD:BT008531.1"
/note="NRPB8B; FUNCTIONS IN: DNA-directed RNA polymerase
activity; INVOLVED IN: transcription; LOCATED IN:
DNA-directed RNA polymerase II, core complex; CONTAINS
InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like
(InterPro:IPR016027), Nucleic acid-binding, OB-fold
(InterPro:IPR012340), RNA polymerase, Rpb8
(InterPro:IPR005570); BEST Arabidopsis thaliana protein
match is: RNA polymerase Rpb8 (TAIR:AT1G54250.1); Has 513
Blast hits to 511 proteins in 218 species: Archae - 0;
Bacteria - 0; Metazoa - 139; Fungi - 205; Plants - 84;
Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink)."
/db_xref="TAIR:AT3G59600"
/db_xref="Araport:AT3G59600"
intron_pos 27:1 (1/3)
intron_pos 80:0 (2/3)
intron_pos 110:2 (3/3)
BEGIN
1 MASNIIMFED IFVVDKLDPD GKKFDKVTRV EARSHNLEMF MHLDVNTEVY PLAVGDKFTL
61 AMAPTLNLDG TPDTGYFTPG AKKTLADKYE YIMHGKLYKI SERDGKTPKA ELYVSFGGLL
121 MLLQGDPAHI SHFELDQRLF LLMRKL
//