LOCUS AEE79207.1 2045 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana ROOT GROWTH DEFECTIVE 3 protein.
ACCESSION CP002686-7693
PROTEIN_ID AEE79207.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RGD3"
/locus_tag="AT3G54280"
/gene_synonym="ATBTAF1"
/gene_synonym="BTAF1"
/gene_synonym="CHA16"
/gene_synonym="CHR16"
/gene_synonym="ROOT GROWTH DEFECTIVE 3"
/inference="Similar to RNA sequence,
EST:INSD:ES215791.1,INSD:CV126006.1,INSD:AV548202.1,
INSD:CB185613.1,INSD:EH875739.1,INSD:EL199832.1,
INSD:EL991887.1,INSD:ES110812.1,INSD:EH923020.1,
INSD:DR260456.1,INSD:ES050073.1,INSD:EL225465.1"
/note="ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN:
binding, helicase activity, DNA binding, nucleic acid
binding, ATP binding; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Armadillo-like helical (InterPro:IPR011989),
DEAD-like helicase, N-terminal (InterPro:IPR014001),
Armadillo-type fold (InterPro:IPR016024), DNA/RNA
helicase, C-terminal (InterPro:IPR001650), Helicase,
superfamily 1/2, ATP-binding domain (InterPro:IPR014021),
SNF2-related (InterPro:IPR000330); BEST Arabidopsis
thaliana protein match is: Homeotic gene regulator
(TAIR:AT3G06010.1); Has 18805 Blast hits to 15736 proteins
in 1976 species: Archae - 119; Bacteria - 5461; Metazoa -
3891; Fungi - 4072; Plants - 1633; Viruses - 163; Other
Eukaryotes - 3466 (source: NCBI BLink)."
/db_xref="TAIR:AT3G54280"
/db_xref="Araport:AT3G54280"
intron_pos 18:1 (1/27)
intron_pos 50:0 (2/27)
intron_pos 122:2 (3/27)
intron_pos 141:0 (4/27)
intron_pos 168:1 (5/27)
intron_pos 281:0 (6/27)
intron_pos 314:1 (7/27)
intron_pos 512:2 (8/27)
intron_pos 557:0 (9/27)
intron_pos 580:0 (10/27)
intron_pos 650:2 (11/27)
intron_pos 731:0 (12/27)
intron_pos 789:0 (13/27)
intron_pos 931:0 (14/27)
intron_pos 1079:0 (15/27)
intron_pos 1119:0 (16/27)
intron_pos 1274:0 (17/27)
intron_pos 1453:2 (18/27)
intron_pos 1618:0 (19/27)
intron_pos 1641:0 (20/27)
intron_pos 1676:0 (21/27)
intron_pos 1753:0 (22/27)
intron_pos 1841:0 (23/27)
intron_pos 1857:2 (24/27)
intron_pos 1894:1 (25/27)
intron_pos 1922:0 (26/27)
intron_pos 1993:0 (27/27)
BEGIN
1 MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD
61 TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN VDEVVAFRNL QSKILANAPF
121 RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE
181 MIRDEDLIEQ KSNVPANGVG NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA
241 KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
301 SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR
361 EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI GGDYDINVKD EDAEFLLPPV
421 KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL
481 DLVKQARHSW IKNFEFLQDC TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM
541 NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
601 DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS
661 QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES PYALSGLAPR LWPFTRHDIT
721 SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE
781 RVWRLLVQCP VDDLEDTAKF YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM
841 KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
901 FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS
961 PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA SQLLHTVETC HCFDKLLSTN
1021 KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN
1081 LHITVTSLVA AAVVWMSEFP ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR
1141 KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201 DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE
1261 SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC VRHSHVAVRL AASRCVMTMA
1321 KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC
1381 MSDVDSSVRQ SVTRSFAALV PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD
1441 YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501 TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII
1561 TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV KQLKAQHRLI LSGTPIQNNI
1621 MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL
1681 LRRTKEEVLS DLPEKIIQDR YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD
1741 VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801 PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY
1861 MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN LTSADTLVFM EHDWNPMRDH
1921 QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL
1981 LDLFASAETS KKGGGSSKKG SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL
2041 TKLNG
//