LOCUS AEE79207.1 2045 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana ROOT GROWTH DEFECTIVE 3 protein. ACCESSION CP002686-7693 PROTEIN_ID AEE79207.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /gene="RGD3" /locus_tag="AT3G54280" /gene_synonym="ATBTAF1" /gene_synonym="BTAF1" /gene_synonym="CHA16" /gene_synonym="CHR16" /gene_synonym="ROOT GROWTH DEFECTIVE 3" /inference="Similar to RNA sequence, EST:INSD:ES215791.1,INSD:CV126006.1,INSD:AV548202.1, INSD:CB185613.1,INSD:EH875739.1,INSD:EL199832.1, INSD:EL991887.1,INSD:ES110812.1,INSD:EH923020.1, INSD:DR260456.1,INSD:ES050073.1,INSD:EL225465.1" /note="ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 18805 Blast hits to 15736 proteins in 1976 species: Archae - 119; Bacteria - 5461; Metazoa - 3891; Fungi - 4072; Plants - 1633; Viruses - 163; Other Eukaryotes - 3466 (source: NCBI BLink)." /db_xref="TAIR:AT3G54280" /db_xref="Araport:AT3G54280" intron_pos 18:1 (1/27) intron_pos 50:0 (2/27) intron_pos 122:2 (3/27) intron_pos 141:0 (4/27) intron_pos 168:1 (5/27) intron_pos 281:0 (6/27) intron_pos 314:1 (7/27) intron_pos 512:2 (8/27) intron_pos 557:0 (9/27) intron_pos 580:0 (10/27) intron_pos 650:2 (11/27) intron_pos 731:0 (12/27) intron_pos 789:0 (13/27) intron_pos 931:0 (14/27) intron_pos 1079:0 (15/27) intron_pos 1119:0 (16/27) intron_pos 1274:0 (17/27) intron_pos 1453:2 (18/27) intron_pos 1618:0 (19/27) intron_pos 1641:0 (20/27) intron_pos 1676:0 (21/27) intron_pos 1753:0 (22/27) intron_pos 1841:0 (23/27) intron_pos 1857:2 (24/27) intron_pos 1894:1 (25/27) intron_pos 1922:0 (26/27) intron_pos 1993:0 (27/27) BEGIN 1 MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD 61 TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN VDEVVAFRNL QSKILANAPF 121 RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE 181 MIRDEDLIEQ KSNVPANGVG NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA 241 KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH 301 SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR 361 EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI GGDYDINVKD EDAEFLLPPV 421 KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL 481 DLVKQARHSW IKNFEFLQDC TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM 541 NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS 601 DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS 661 QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES PYALSGLAPR LWPFTRHDIT 721 SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE 781 RVWRLLVQCP VDDLEDTAKF YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM 841 KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI 901 FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS 961 PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA SQLLHTVETC HCFDKLLSTN 1021 KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN 1081 LHITVTSLVA AAVVWMSEFP ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR 1141 KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE 1201 DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE 1261 SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC VRHSHVAVRL AASRCVMTMA 1321 KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC 1381 MSDVDSSVRQ SVTRSFAALV PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD 1441 YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS 1501 TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII 1561 TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV KQLKAQHRLI LSGTPIQNNI 1621 MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL 1681 LRRTKEEVLS DLPEKIIQDR YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD 1741 VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS 1801 PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY 1861 MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN LTSADTLVFM EHDWNPMRDH 1921 QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL 1981 LDLFASAETS KKGGGSSKKG SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL 2041 TKLNG //