LOCUS AEE79159.1 571 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNApolymerase sigma-subunit C protein.
ACCESSION CP002686-7630
PROTEIN_ID AEE79159.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="SIGC"
/locus_tag="AT3G53920"
/gene_synonym="RNA POLYMERASE SIGMA-SUBUNIT"
/gene_synonym="RNApolymerase sigma-subunit C"
/gene_synonym="SIG3"
/gene_synonym="SIGMA FACTOR 3"
/inference="Similar to RNA sequence,
EST:INSD:EH986147.1,INSD:EL045784.1,INSD:EH804959.1,
INSD:DR211393.1,INSD:ES172261.1,INSD:EL258233.1,
INSD:EL245132.1,INSD:ES211477.1,INSD:EL241830.1,
INSD:AV796531.1,INSD:BX836718.1,INSD:EL207313.1,
INSD:AI996896.1,INSD:AV782589.1,INSD:ES051832.1,
INSD:EH888636.1,INSD:ES076894.1,INSD:EL182969.1,
INSD:EL337110.1,INSD:EL128811.1,INSD:ES178597.1,
INSD:EL204730.1,INSD:AV519147.1,INSD:N97044.1,
INSD:AV440157.1,INSD:EL256466.1,INSD:DR379591.1,
INSD:CB263943.1,INSD:EH922084.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF015544.1,INSD:AY128331.1,INSD:AB004822.1,
INSD:BT030362.1,INSD:BX824234.1,INSD:D89994.1"
/note="RNApolymerase sigma-subunit C (SIGC); CONTAINS
InterPro DOMAIN/s: RNA polymerase sigma factor, region 2
(InterPro:IPR013325), Winged helix-turn-helix
transcription repressor DNA-binding (InterPro:IPR011991),
RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA
polymerase sigma-70 (InterPro:IPR014284), RNA polymerase
sigma factor, region 3/4 (InterPro:IPR013324), RNA
polymerase sigma factor, SigB/SigC/SigD, plastid
(InterPro:IPR016262), RNA polymerase sigma-70 region 2
(InterPro:IPR007627), RNA polymerase sigma-70 region 4
(InterPro:IPR007630), RNA polymerase sigma-70 factor
(InterPro:IPR000943); BEST Arabidopsis thaliana protein
match is: RNApolymerase sigma subunit 2
(TAIR:AT1G08540.1); Has 22698 Blast hits to 22688 proteins
in 2768 species: Archae - 0; Bacteria - 16386; Metazoa -
0; Fungi - 0; Plants - 273; Viruses - 4; Other Eukaryotes
- 6035 (source: NCBI BLink)."
/db_xref="TAIR:AT3G53920"
/db_xref="Araport:AT3G53920"
intron_pos 13:0 (1/8)
intron_pos 47:0 (2/8)
intron_pos 73:1 (3/8)
intron_pos 129:0 (4/8)
intron_pos 287:0 (5/8)
intron_pos 364:0 (6/8)
intron_pos 411:0 (7/8)
intron_pos 479:0 (8/8)
BEGIN
1 MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS
61 LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN DSLKACGCAS VSPYTAQNNV
121 YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK
181 LGAAELFKTC LSRYRGSSIT SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG
241 DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE
301 ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED
361 LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV SRHARGVHIP SSIIRTINHI
421 QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF
481 TPDTTMESPE EAVMRQSARR DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV
541 SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q
//