LOCUS AEE79159.1 571 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana RNApolymerase sigma-subunit C protein. ACCESSION CP002686-7630 PROTEIN_ID AEE79159.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /gene="SIGC" /locus_tag="AT3G53920" /gene_synonym="RNA POLYMERASE SIGMA-SUBUNIT" /gene_synonym="RNApolymerase sigma-subunit C" /gene_synonym="SIG3" /gene_synonym="SIGMA FACTOR 3" /inference="Similar to RNA sequence, EST:INSD:EH986147.1,INSD:EL045784.1,INSD:EH804959.1, INSD:DR211393.1,INSD:ES172261.1,INSD:EL258233.1, INSD:EL245132.1,INSD:ES211477.1,INSD:EL241830.1, INSD:AV796531.1,INSD:BX836718.1,INSD:EL207313.1, INSD:AI996896.1,INSD:AV782589.1,INSD:ES051832.1, INSD:EH888636.1,INSD:ES076894.1,INSD:EL182969.1, INSD:EL337110.1,INSD:EL128811.1,INSD:ES178597.1, INSD:EL204730.1,INSD:AV519147.1,INSD:N97044.1, INSD:AV440157.1,INSD:EL256466.1,INSD:DR379591.1, INSD:CB263943.1,INSD:EH922084.1" /inference="Similar to RNA sequence, mRNA:INSD:AF015544.1,INSD:AY128331.1,INSD:AB004822.1, INSD:BT030362.1,INSD:BX824234.1,INSD:D89994.1" /note="RNApolymerase sigma-subunit C (SIGC); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630), RNA polymerase sigma-70 factor (InterPro:IPR000943); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 22698 Blast hits to 22688 proteins in 2768 species: Archae - 0; Bacteria - 16386; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 4; Other Eukaryotes - 6035 (source: NCBI BLink)." /db_xref="TAIR:AT3G53920" /db_xref="Araport:AT3G53920" intron_pos 13:0 (1/8) intron_pos 47:0 (2/8) intron_pos 73:1 (3/8) intron_pos 129:0 (4/8) intron_pos 287:0 (5/8) intron_pos 364:0 (6/8) intron_pos 411:0 (7/8) intron_pos 479:0 (8/8) BEGIN 1 MASFNSFPIP KQIVGSSSSS SSSTSRPRIL VRSSLTSSMT STNSMLVFVH PHPLIKHWLS 61 LLRSDQTSFP IFVRIPMTSV VATRWSFLSS VKEESRIYQN DSLKACGCAS VSPYTAQNNV 121 YVELKDPKEN IGVGSAERSY SSRSMLQYNL LAKNLLALEE TFVALDSVRM ERDIMLQMGK 181 LGAAELFKTC LSRYRGSSIT SCLSDTTELV DTTPNQQVFV SSRRKVKKKA RRSSVTAENG 241 DQSSLPIGLR TTWNNIDVPR VRRPPKYRKK RERISRNETE MSTGVKIVAD MERIRTQLEE 301 ESGKVASLSC WAAAAGMNEK LLMRNLHYGW YCRDELVKST RSLVLFLARN YRGLGIAHED 361 LIQAGYVGVL QGAERFDHTR GYKFSTYVQY WIRKSMSTMV SRHARGVHIP SSIIRTINHI 421 QKARKTLKTS HGIKYAADEE IAKLTGHSVK KIRAANQCLK VVGSIDKKVG DCFTTKFLEF 481 TPDTTMESPE EAVMRQSARR DIHDLLEGLE PREKQVMVLR YGLQDYRPKS LEEIGKLLKV 541 SKEWIRKIER RAMAKLRDQP NAEDLRYYLN Q //