LOCUS AEE79113.1 362 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana diaminopimelate epimerase family
protein protein.
ACCESSION CP002686-7570
PROTEIN_ID AEE79113.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G53580"
/inference="Similar to RNA sequence,
EST:INSD:EL161090.1,INSD:AV815213.1,INSD:DR361444.1,
INSD:EH903788.1,INSD:EL308602.1,INSD:DR361441.1,
INSD:DR377844.1,INSD:AV551609.1,INSD:AV785187.1,
INSD:EL035064.1,INSD:EL107483.1,INSD:EH841173.1,
INSD:ES127731.1,INSD:BP625449.1,INSD:DR361449.1,
INSD:DR356416.1,INSD:DR361453.1,INSD:BX838534.1,
INSD:AV564304.1,INSD:DR356420.1,INSD:EH975633.1,
INSD:DR356415.1,INSD:EH915821.1,INSD:T42830.1,
INSD:DR361447.1,INSD:EH839140.1,INSD:DR361448.1,
INSD:DR237247.1,INSD:DR361430.1,INSD:DR361436.1,
INSD:EL173732.1,INSD:DR361461.1,INSD:DR361435.1,
INSD:EH923955.1,INSD:EL994510.1,INSD:ES017171.1,
INSD:DR361454.1,INSD:EH895873.1,INSD:EL192208.1,
INSD:EL186678.1,INSD:DR361439.1,INSD:DR361438.1,
INSD:AI997796.1,INSD:EH924012.1,INSD:ES168485.1,
INSD:DR361432.1,INSD:DR380801.1,INSD:EL161271.1,
INSD:ES090540.1,INSD:EL142778.1,INSD:EL070251.1,
INSD:EH980201.1,INSD:CB253262.1,INSD:DR237243.1,
INSD:EL242153.1,INSD:EH821129.1,INSD:AV566257.1,
INSD:EG467452.1,INSD:EH988092.1,INSD:EL293570.1,
INSD:DR361462.1,INSD:EH811178.1,INSD:EH899554.1,
INSD:EL983350.1,INSD:BX835132.1,INSD:DR356417.1,
INSD:AV784497.1,INSD:EL201849.1,INSD:DR361458.1,
INSD:DR380790.1,INSD:DR361433.1,INSD:BP636088.1,
INSD:DR361446.1,INSD:EH887663.1,INSD:AV440665.1,
INSD:DR361445.1,INSD:EL092075.1,INSD:AV824050.1,
INSD:DR361440.1,INSD:AV534937.1,INSD:AV441974.1,
INSD:AV439586.1,INSD:EL198813.1,INSD:EG521089.1,
INSD:T04612.1,INSD:DR361452.1,INSD:EH873970.1,
INSD:AV518382.1,INSD:EG499735.1,INSD:EL110690.1,
INSD:DR361460.1,INSD:DR382614.1,INSD:EL042600.1,
INSD:EG467453.1,INSD:DR376591.1,INSD:DR361459.1,
INSD:DR361450.1,INSD:EL324360.1,INSD:EG499734.1,
INSD:DR374196.1,INSD:DR361451.1,INSD:EL333599.1,
INSD:EL209120.1,INSD:EL006745.1,INSD:DR361428.1,
INSD:EL285298.1,INSD:EL086906.1,INSD:AV539205.1,
INSD:DR356419.1,INSD:EL177137.1,INSD:AI994805.1,
INSD:DR361457.1,INSD:EL167915.1,INSD:ES169349.1,
INSD:DR361431.1,INSD:DR237242.1,INSD:DR361429.1,
INSD:EL267906.1,INSD:DR361455.1,INSD:EL127354.1,
INSD:DR237244.1,INSD:ES159907.1,INSD:ES112225.1,
INSD:DR356418.1,INSD:EL976202.1,INSD:AV816832.1,
INSD:EH804062.1,INSD:DR361463.1,INSD:EH868938.1,
INSD:ES185809.1,INSD:DR361456.1,INSD:EH923797.1,
INSD:AV558777.1,INSD:EL341619.1,INSD:EH863078.1,
INSD:EL238510.1,INSD:EH963772.1,INSD:BP561026.1,
INSD:EL131929.1,INSD:BE529275.1,INSD:ES048278.1,
INSD:AV442338.1,INSD:BX837545.1,INSD:AV561832.1,
INSD:BX834623.1,INSD:EH970822.1,INSD:N38672.1,
INSD:CB256888.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX824490.1,INSD:AY126996.1,INSD:AY143871.1,
INSD:BX823864.1,INSD:BX824658.1,INSD:BX823665.1,
INSD:BX825393.1,INSD:BX824557.1"
/note="diaminopimelate epimerase family protein; FUNCTIONS
IN: diaminopimelate epimerase activity; INVOLVED IN:
lysine biosynthetic process via diaminopimelate; LOCATED
IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Diaminopimelate epimerase, active site
(InterPro:IPR018510), Diaminopimelate epimerase
(InterPro:IPR001653); Has 7123 Blast hits to 7119 proteins
in 2112 species: Archae - 88; Bacteria - 4300; Metazoa -
6; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes -
2667 (source: NCBI BLink)."
/db_xref="TAIR:AT3G53580"
/db_xref="Araport:AT3G53580"
intron_pos 93:0 (1/8)
intron_pos 149:0 (2/8)
intron_pos 172:2 (3/8)
intron_pos 192:0 (4/8)
intron_pos 252:0 (5/8)
intron_pos 280:1 (6/8)
intron_pos 300:1 (7/8)
intron_pos 325:0 (8/8)
BEGIN
1 MEIAAVSTVS VAPQSRRVSN AFSRNLGSVS SLSFGFFEKE YCFKSPSLRV SAAASMDAVT
61 AEKFSPASFL DKKETGVLHF VKYHGLGNDF ILVDNRDSSE PKITQEQAAK LCDRNFGVGA
121 DGVIFAMPGV NGTDYAMRIF NSDGSEPEMC GNGVRCFARF IAELENLQGK HSFTIHTGAG
181 LIVPEIQDDG QVKVDMGTPI LKAQDVPTKL SGNKGEAVVE AELVVDGVSW NVTCVSMGNP
241 HCITFGKKGG PNLKVDDLNL PEIGPKFEHH EMFPARTNTE FVEVLSRSHL KMRVWERGAG
301 ATLACGTGAC ALVVAAVLEG RADRKCTVDL PGGPLEIEWK QEDNHIYMTG PAEAVFYGSA
361 LL
//