LOCUS AEE78922.1 294 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pseudouridine synthase family protein protein.
ACCESSION CP002686-7332
PROTEIN_ID AEE78922.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G52260"
/inference="Similar to RNA sequence,
EST:INSD:AV796917.1,INSD:ES186414.1,INSD:AV803165.1,
INSD:AV816461.1,INSD:EL178324.1,INSD:ES101382.1,
INSD:ES008482.1,INSD:AV524013.1,INSD:BP573539.1,
INSD:AV523520.1,INSD:ES129317.1,INSD:EL239674.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY069882.1,INSD:BT020427.1"
/note="Pseudouridine synthase family protein; FUNCTIONS
IN: pseudouridine synthase activity, RNA binding; INVOLVED
IN: pseudouridine synthesis, RNA modification; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Pseudouridine synthase, catalytic
domain (InterPro:IPR020103), Pseudouridine synthase, RsuA
and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine
synthase, RluC/RluD, conserved site (InterPro:IPR006224),
RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis
thaliana protein match is: Pseudouridine synthase family
protein (TAIR:AT5G51140.1); Has 17575 Blast hits to 17575
proteins in 2702 species: Archae - 12; Bacteria - 13701;
Metazoa - 198; Fungi - 201; Plants - 200; Viruses - 0;
Other Eukaryotes - 3263 (source: NCBI BLink)."
/db_xref="TAIR:AT3G52260"
/db_xref="Araport:AT3G52260"
intron_pos 31:1 (1/11)
intron_pos 51:2 (2/11)
intron_pos 61:0 (3/11)
intron_pos 76:2 (4/11)
intron_pos 107:0 (5/11)
intron_pos 163:1 (6/11)
intron_pos 191:2 (7/11)
intron_pos 220:0 (8/11)
intron_pos 245:1 (9/11)
intron_pos 268:0 (10/11)
intron_pos 290:0 (11/11)
BEGIN
1 MSPPPQRIGL PWPELNDGLA YKDAISSSES ELTTVSEFYF TKYKSSAPLL GWIQRIQNGQ
61 IQIDGEVVKD PNTLLRSGSK LVYSRLPWKE PDTPYSLEVL YEDDDLIALN KPSGLQVLPG
121 GLFQQRTVLT QLQWCFGKND SYIGSRESPH PVPVHRLGRG TSGILLCAKT KLAKTKLAAY
181 FAEGTSLVGS GNLDQECGTG RKLSKIYRAL ADGIVEEDEV VIKQPIGVVR YPGVAQGLYV
241 ASPEGKPAFS KVFVLERDRE KNCSLVKVEI QSGRPHQIRI HLAYMGHPLG TLFM
//