LOCUS AEE78879.1 425 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana 5'-3' exonuclease family protein protein.
ACCESSION CP002686-7270
PROTEIN_ID AEE78879.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G52050"
/inference="Similar to RNA sequence,
EST:INSD:EL034090.1,INSD:ES015801.1,INSD:EL990763.1,
INSD:EH808539.1,INSD:ES192659.1,INSD:BX838252.1,
INSD:EL282109.1,INSD:BX835217.1,INSD:BP780923.1,
INSD:ES033330.1,INSD:ES145847.1,INSD:EL146421.1,
INSD:BX834657.1,INSD:EL262147.1,INSD:ES080496.1,
INSD:EL971067.1,INSD:AV566245.1"
/inference="Similar to RNA sequence, mRNA:INSD:BT026121.1"
/note="5'-3' exonuclease family protein; FUNCTIONS IN:
5'-3' exonuclease activity, DNA binding, catalytic
activity; LOCATED IN: mitochondrion; CONTAINS InterPro
DOMAIN/s: 5'-3' exonuclease, SAM-fold domain
(InterPro:IPR020047), 5'-3' exonuclease, N-terminal
(InterPro:IPR002421), 5'-3' exonuclease, C-terminal
subdomain (InterPro:IPR020045), 5'-3' exonuclease,
N-terminal resolvase-like domain (InterPro:IPR020046),
Helix-hairpin-helix motif, class 2 (InterPro:IPR008918);
BEST Arabidopsis thaliana protein match is: 5'-3'
exonuclease family protein (TAIR:AT1G34380.2); Has 9747
Blast hits to 9742 proteins in 2555 species: Archae - 3;
Bacteria - 6179; Metazoa - 6; Fungi - 13; Plants - 105;
Viruses - 31; Other Eukaryotes - 3410 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G52050"
/db_xref="Araport:AT3G52050"
intron_pos 43:0 (1/14)
intron_pos 114:1 (2/14)
intron_pos 141:0 (3/14)
intron_pos 154:0 (4/14)
intron_pos 160:1 (5/14)
intron_pos 178:1 (6/14)
intron_pos 221:0 (7/14)
intron_pos 244:0 (8/14)
intron_pos 272:2 (9/14)
intron_pos 309:1 (10/14)
intron_pos 326:1 (11/14)
intron_pos 346:0 (12/14)
intron_pos 361:0 (13/14)
intron_pos 386:0 (14/14)
BEGIN
1 MTLHLYHHSR FLWRNLCFPR SVGNLCNRNC SLISPSLARS AKYYCSSVAV SEFSNEAASG
61 STLTSISEDV TPQSIKYPFK SEERVASTAA SSNGRVMLID GTSIIYRAYY KLLARLNHGH
121 LAHADGNADW VLTIFSSLSL LIDVLKFLPS HVAVVFDHDG VPYGTTSNSS TGYRSAKGMN
181 FRHTLYPAYK SNRPPTPDTI VQGLQYLKAS IKAMSIKVIE VPGVEADDVI GTLAMRSISA
241 GFKVRVVSPD KDFFQILSPS LRLLRLTPRG SEMASFGMED FAKKFGNLEP AQFVDIIALA
301 GDKSDNIPGV DGIGNVHAVE LISRFGTLEN LLQSVDEIKE GKIKESLIAS ADQAILSKKL
361 ALLRSDLPDY IVPFDTKDLT FKKPEDNGEK LSSLLIAIAD YAEGFSADPV IRRAFRLWEK
421 LEAVP
//