LOCUS AEE78777.1 790 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana VPS35 homolog C protein.
ACCESSION CP002686-7128
PROTEIN_ID AEE78777.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="VPS35C"
/locus_tag="AT3G51310"
/gene_synonym="VPS35 homolog C"
/inference="Similar to RNA sequence,
EST:INSD:BP819480.1,INSD:BP580923.1,INSD:DR369043.1,
INSD:EL174615.1,INSD:BE037739.1,INSD:EH943804.1,
INSD:AV552594.1,INSD:BP626830.1,INSD:EL290069.1,
INSD:EL092869.1,INSD:AA585997.1,INSD:ES186265.1,
INSD:AV544126.1,INSD:BP642361.1,INSD:EH972827.1,
INSD:ES178500.1,INSD:ES018926.1,INSD:EG420675.1,
INSD:EG481590.1,INSD:AU226283.1,INSD:EG446927.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX825234.1,INSD:AB368490.1"
/note="VPS35 homolog C (VPS35C); FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: intracellular
protein transport, endosome to lysosome transport,
retrograde transport, endosome to Golgi; LOCATED IN:
microsome, retromer complex, membrane, multivesicular
body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar
protein sorting-associated protein 35
(InterPro:IPR005378); BEST Arabidopsis thaliana protein
match is: VPS35 homolog A (TAIR:AT2G17790.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G51310"
/db_xref="Araport:AT3G51310"
intron_pos 29:0 (1/20)
intron_pos 61:1 (2/20)
intron_pos 102:2 (3/20)
intron_pos 164:2 (4/20)
intron_pos 194:0 (5/20)
intron_pos 213:0 (6/20)
intron_pos 243:0 (7/20)
intron_pos 284:0 (8/20)
intron_pos 329:0 (9/20)
intron_pos 368:0 (10/20)
intron_pos 448:0 (11/20)
intron_pos 470:0 (12/20)
intron_pos 500:0 (13/20)
intron_pos 530:0 (14/20)
intron_pos 560:0 (15/20)
intron_pos 583:0 (16/20)
intron_pos 610:0 (17/20)
intron_pos 646:0 (18/20)
intron_pos 680:2 (19/20)
intron_pos 720:2 (20/20)
BEGIN
1 MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL
61 YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP RLYLLCTIGS VYIKSKDVTA
121 TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF
181 TEMNKLWVRM QHQGPSREKE KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL
241 EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS
301 NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL
361 DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY NNVVTILKLT NYPLVMEYLD
421 RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN
481 LVARLVNKLY IDDPEEMSKI IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN
541 PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA
601 YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV
661 YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN ASRGTSSTGS VSLYVELLNK
721 YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK
781 YEKIKMEWFE
//