LOCUS AEE78777.1 790 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana VPS35 homolog C protein. ACCESSION CP002686-7128 PROTEIN_ID AEE78777.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /gene="VPS35C" /locus_tag="AT3G51310" /gene_synonym="VPS35 homolog C" /inference="Similar to RNA sequence, EST:INSD:BP819480.1,INSD:BP580923.1,INSD:DR369043.1, INSD:EL174615.1,INSD:BE037739.1,INSD:EH943804.1, INSD:AV552594.1,INSD:BP626830.1,INSD:EL290069.1, INSD:EL092869.1,INSD:AA585997.1,INSD:ES186265.1, INSD:AV544126.1,INSD:BP642361.1,INSD:EH972827.1, INSD:ES178500.1,INSD:ES018926.1,INSD:EG420675.1, INSD:EG481590.1,INSD:AU226283.1,INSD:EG446927.1" /inference="Similar to RNA sequence, mRNA:INSD:BX825234.1,INSD:AB368490.1" /note="VPS35 homolog C (VPS35C); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, endosome to lysosome transport, retrograde transport, endosome to Golgi; LOCATED IN: microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog A (TAIR:AT2G17790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /db_xref="TAIR:AT3G51310" /db_xref="Araport:AT3G51310" intron_pos 29:0 (1/20) intron_pos 61:1 (2/20) intron_pos 102:2 (3/20) intron_pos 164:2 (4/20) intron_pos 194:0 (5/20) intron_pos 213:0 (6/20) intron_pos 243:0 (7/20) intron_pos 284:0 (8/20) intron_pos 329:0 (9/20) intron_pos 368:0 (10/20) intron_pos 448:0 (11/20) intron_pos 470:0 (12/20) intron_pos 500:0 (13/20) intron_pos 530:0 (14/20) intron_pos 560:0 (15/20) intron_pos 583:0 (16/20) intron_pos 610:0 (17/20) intron_pos 646:0 (18/20) intron_pos 680:2 (19/20) intron_pos 720:2 (20/20) BEGIN 1 MIADDDEKWL AAAIAAVKQN AFYMQRAIDS NNLKDALKFS AQMLSELRTS KLSPHKYYEL 61 YMRVFNELGT LEIFFKEETG RGCSIAELYE LVQHAGNILP RLYLLCTIGS VYIKSKDVTA 121 TDILKDLVEM CRAVQHPLRG LFLRSYLAQV TRDKLPSIGS DLEGDGDAHM NALEFVLQNF 181 TEMNKLWVRM QHQGPSREKE KREKERNELR DLVGKNLHVL SQLEGVDLGI YRDTVLPRIL 241 EQVVNCKDEL AQCYLMDCII QVFPDDFHLQ TLDVLLGACP QLQPSVDIKT VLSGLMERLS 301 NYAASSVEAL PNFLQVEAFS KLNYAIGKVV EAQADLPAAA SVTLYLFLLK FTLHVYSDRL 361 DYVDQVLGSC VTQLSATGKL CDDKAAKQIV AFLSAPLEKY NNVVTILKLT NYPLVMEYLD 421 RETNKAMAII LVQSVFKNNT HIATADEVDA LFELAKGLMK DFDGTIDDEI DEEDFQEEQN 481 LVARLVNKLY IDDPEEMSKI IFTVRKHIVA GGPKRLPLTI PPLVFSALKL IRRLRGGDEN 541 PFGDDASATP KRILQLLSET VEVLSDVSAP DLALRLYLQC AQAANNCELE TVAYEFFTKA 601 YLLYEEEISD SKAQVTALRL IIGTLQRMRV FNVENRDTLT HKATGYSARL LRKPDQCRAV 661 YECAHLFWAD ECENLKDGER VVLCLKRAQR IADAVQQMAN ASRGTSSTGS VSLYVELLNK 721 YLYFLEKGNQ QVTGDTIKSL AELIKSETKK VESGAEPFIN STLRYIEFQR QQEDGGMNEK 781 YEKIKMEWFE //