LOCUS AEE78343.1 1568 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Ubiquitin carboxyl-terminal hydrolase-
related protein protein.
ACCESSION CP002686-6556
PROTEIN_ID AEE78343.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G47890"
/inference="Similar to RNA sequence,
EST:INSD:EL318760.1,INSD:ES101125.1,INSD:AV523259.1,
INSD:EG451479.1,INSD:ES205325.1,INSD:EL270290.1,
INSD:EL323486.1,INSD:AV528739.1,INSD:AV564409.1,
INSD:EL116563.1,INSD:ES136699.1,INSD:ES153376.1,
INSD:ES206521.1,INSD:EL126267.1,INSD:AV807996.1,
INSD:BU636190.1,INSD:EH880570.1,INSD:ES141149.1,
INSD:BP780467.1,INSD:EH967293.1,INSD:ES067463.1,
INSD:EL048772.1,INSD:BP790481.1,INSD:ES002449.1,
INSD:EL253677.1,INSD:EG451478.1"
/note="Ubiquitin carboxyl-terminal hydrolase-related
protein; FUNCTIONS IN: ubiquitin thiolesterase activity,
zinc ion binding; INVOLVED IN: ubiquitin-dependent protein
catabolic process; LOCATED IN: intracellular; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF627
(InterPro:IPR006866), Peptidase C19, ubiquitin
carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc
finger, C2H2-type (InterPro:IPR007087), Protein of unknown
function DUF629 (InterPro:IPR006865); BEST Arabidopsis
thaliana protein match is: Ubiquitin carboxyl-terminal
hydrolase-related protein (TAIR:AT3G47910.2); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G47890"
/db_xref="Araport:AT3G47890"
intron_pos 824:0 (1/14)
intron_pos 867:0 (2/14)
intron_pos 931:0 (3/14)
intron_pos 947:2 (4/14)
intron_pos 1052:0 (5/14)
intron_pos 1094:1 (6/14)
intron_pos 1161:1 (7/14)
intron_pos 1193:1 (8/14)
intron_pos 1254:0 (9/14)
intron_pos 1326:0 (10/14)
intron_pos 1418:0 (11/14)
intron_pos 1467:1 (12/14)
intron_pos 1512:0 (13/14)
intron_pos 1541:0 (14/14)
BEGIN
1 MGQKKKAPAP LDSALIKLEC EKALKSFGRG SYNKAIRLIK DSCSRHQDSA LIHRVQGTIC
61 VKVAAVYEDL ATKQKYLRNA IESARKAVEL SPDSIEFGHF YANLLYEAAN DGKREYDEVV
121 QECHRALSIE NPIDPAKESL QDETQLKILT PEARIVHVQD ELRSLIQKSN ISSLSTWMNN
181 LGKGEEKFRL IPIRRMAEDP IESNLVQTRR PNEIKKANKS IEEIRKEVEV RVAAARLLQQ
241 KSECENVGAV DNKGSDATLG SGKRSGERRK HGNARRNGST ADRRDRVKSY WDSMSKEMKK
301 QLLRVKLSDL KSHFSASKDG NENEIISEAL SFCEANKTWR FWVCCQCSEK FIKSEAYMHH
361 IVQVHMGNVL PKMQMVLPQS FDTERIDMLL TSPWKPLDLS AAVKWLRSRQ KIQNSEFSEF
421 HAGDNMDDGD DCFKDARNDT SPEKESLGDS CKGCDENDPE EGKLSITFPP PDGWPISDDP
481 ERAKLLEKIR AAFELLIRHK YLAASHHDKV IQFTLDELQN LASVSQFLNR SLNQSPICIC
541 FLGASQLRKI LKFLQDLSQA CGLSRYSEQS NPNDEFNFGA LCREVTEEIL LDGEDSCLLL
601 DEKLLGTECI QEIYMGSALH NVAVASSGDI ANGNDVSSGA DGFLSWIFTG PSSEEQVVSW
661 MRTKEEKTNQ GLEIMQHLEK EFYHLQNLCE RKCEHLSYEG ALQTVEDLCL EESRKRETSA
721 EFTHESYESV LRKRREELNE NDLELVFISS RFELDALTNV LKDAETLNHN QFGYEESYGC
781 TSSQLRDLES GEADEWGMKD SLHEADSFIE VAIQKQKEQL SAELSRIDAQ MMRNVTGMQQ
841 LELKLGPVSS NDYQIVLLPL VKSYMRAHLE ALAEKDATEK SDAAREALLF ELALDSKKEG
901 RGRNDNSKHT LEKSKDKKKI KDTRKLKNLK ATIGNDHRFN GDSIEHSLLS VASFGDHSEA
961 DVVSEAIEAL SDEEEEYRRC NELEEEERKL AKTLEYQRRI ENEAKEKHIA EQKKKYSCSD
1021 PMNVTEAVYD DCIENFFDDA DLQEQEKPIN QEKWNKQLDD LEGAKVNING VFPSTNHCVI
1081 SDTAKVLDVI SQEVVPNGIA IQAGVFQSDQ RPGRRGRRQK ASNKLVDGKY QVTLSESEDS
1141 KSQRSGTDSE RQSETLRSNG DAGPKTLRQL QAEDDEEERF QADLKRAKLQ SLDVYRGRRN
1201 MTSCLRTSLE DNNDWVLSDV TKESQSSPGV AIFGTGLQNE VGEYNCFLNV IIQSLWNLGM
1261 FRAEFLRSST LEHHHFGDPC VVCSLYAIFT ALSTASSETR KEPVAPSSLR IALSNLYPDS
1321 SFFQEAQMND ASEVLAVIFD CLHRSFAQSS SVSDTESAES NSTGSWDCAN RSCIAHSLFG
1381 MDVSEQLNCY SCGLESRHLK YTSFFHNINA SALRTMKVTC AENSFDELLN LVEMNHQLAC
1441 DREAGGCGKR NHIHHILTTP PHVFTIVLGW QNTCETVEDI AATLAALNTE IDISIMYRGV
1501 DPKNTYSLVS VVCYYGQHYH CFAYSHEHDQ WIMYDDQNVK VIGSWSDVLS MCKRGHLQPQ
1561 VLLYEKKL
//