LOCUS AEE78249.1 245 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein protein.
ACCESSION CP002686-6431
PROTEIN_ID AEE78249.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G47160"
/inference="Similar to RNA sequence,
EST:INSD:EL229842.1,INSD:EL147942.1,INSD:ES187517.1,
INSD:EH930279.1,INSD:CF651882.1,INSD:AI993588.1,
INSD:AV809765.1,INSD:ES105493.1,INSD:DR268619.1,
INSD:DR268617.1,INSD:EL115596.1,INSD:N97154.1,
INSD:ES183747.1,INSD:EL989050.1,INSD:BP859843.1,
INSD:DR268616.1,INSD:BP602550.1,INSD:ES129001.1,
INSD:DR268618.1,INSD:ES005927.1,INSD:AV830047.1,
INSD:BP864946.1,INSD:ES070603.1,INSD:BP851827.1,
INSD:ES001143.1,INSD:ES181774.1,INSD:DR268621.1,
INSD:ES047232.1,INSD:DR371574.1,INSD:ES077628.1,
INSD:DR268622.1,INSD:EL340508.1,INSD:EL041672.1,
INSD:EL120314.1,INSD:EH828112.1,INSD:DR268620.1,
INSD:T45931.1,INSD:H37161.1,INSD:EH874273.1,
INSD:EH884494.1,INSD:AV557901.1,INSD:EL294738.1,
INSD:BP614029.1,INSD:EL054612.1,INSD:EL247373.1,
INSD:EL040620.1,INSD:ES135562.1,INSD:ES045623.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY088865.1,INSD:AY099618.1,INSD:BT002136.1,
INSD:DQ086845.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
finger, RING-type, conserved site (InterPro:IPR017907),
Zinc finger, RING-type (InterPro:IPR001841); BEST
Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT5G58787.1); Has 1132 Blast
hits to 1132 proteins in 162 species: Archae - 0; Bacteria
- 0; Metazoa - 465; Fungi - 45; Plants - 326; Viruses -
118; Other Eukaryotes - 178 (source: NCBI BLink)."
/db_xref="TAIR:AT3G47160"
/db_xref="Araport:AT3G47160"
intron_pos 23:2 (1/4)
intron_pos 74:0 (2/4)
intron_pos 96:1 (3/4)
intron_pos 174:2 (4/4)
BEGIN
1 MAKVSFKDSL KALEADIQHA NTVALDYPRE KDGARVQMRL SYTPAAQFLL FLVQWTDCHL
61 AGTLGLLRVL IYMTYADGKT TMSVYERKTS IKDFYAVIFP SLLQLERGIT DLDDRKQKEV
121 CKIRYRNKDE TEKVKLSEID IEREEECGIC MEMNNMVVLP NCTHSLCIKC YRDWHGRSES
181 CPFCRDSLKR VNSGDLWMLM EKSDTVNMYT IERENKKRLF VYIEKLPLVV PDQVFASSPY
241 DCHVK
//