LOCUS AEE76370.1 379 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TRAF-like family protein protein.
ACCESSION CP002686-3838
PROTEIN_ID AEE76370.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G20370"
/inference="Similar to RNA sequence,
EST:INSD:EH989541.1,INSD:EH850113.1,INSD:EH924318.1,
INSD:EL152920.1,INSD:BP576915.1,INSD:EL231178.1,
INSD:EL252992.1,INSD:EL067067.1,INSD:DR242781.1,
INSD:DR287297.1,INSD:EL315548.1,INSD:EL043119.1,
INSD:DR287294.1,INSD:EH976758.1,INSD:AV794079.1,
INSD:AV820158.1,INSD:H76243.1,INSD:EL250926.1,
INSD:EL008333.1,INSD:T45374.1,INSD:BP847916.1,
INSD:EH899301.1,INSD:BP570342.1,INSD:EH942127.1,
INSD:EL319705.1,INSD:DR379925.1,INSD:DR242783.1,
INSD:AV521997.1,INSD:EH805095.1,INSD:DR287285.1,
INSD:EH814222.1,INSD:BP853868.1,INSD:AI099971.1,
INSD:EH961956.1,INSD:DR378373.1,INSD:EH941893.1,
INSD:EL246805.1,INSD:EL025510.1,INSD:EL272087.1,
INSD:EL170496.1,INSD:EH892378.1,INSD:EL297210.1,
INSD:DR287287.1,INSD:N38694.1,INSD:BP577220.1,
INSD:EL034372.1,INSD:DR287286.1,INSD:EL096492.1,
INSD:EG458675.1,INSD:BP579370.1,INSD:H76888.1,
INSD:EL305739.1,INSD:EH922565.1,INSD:DR287292.1,
INSD:F19873.1,INSD:EL146685.1,INSD:EL200022.1,
INSD:T45377.1,INSD:EL075361.1,INSD:AV823021.1,
INSD:DR195312.1,INSD:AA067519.1,INSD:EL053958.1,
INSD:EL047524.1,INSD:AI992740.1,INSD:DR242785.1,
INSD:AV783913.1,INSD:DR287290.1,INSD:DR287289.1,
INSD:DR282013.1,INSD:DR287295.1,INSD:EH807252.1,
INSD:EL051367.1,INSD:AV540340.1,INSD:EH984100.1,
INSD:DR195311.1,INSD:AV793984.1,INSD:DR376644.1,
INSD:EL076147.1,INSD:DR242782.1,INSD:DR287296.1,
INSD:CF652303.1,INSD:EL226199.1,INSD:DR287288.1,
INSD:DR287293.1,INSD:DR287299.1,INSD:EH935682.1,
INSD:DR195313.1,INSD:EH986554.1,INSD:CB263123.1,
INSD:EL269505.1,INSD:CF652302.1,INSD:EH844096.1,
INSD:AI993266.1,INSD:EH988868.1,INSD:F15496.1,
INSD:DR242784.1,INSD:EL116217.1,INSD:BP584862.1,
INSD:DR287291.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY097389.1,INSD:AY074866.1,INSD:AY088016.1"
/note="TRAF-like family protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: membrane;
EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
seedling growth; CONTAINS InterPro DOMAIN/s: TRAF-like
(InterPro:IPR008974), MATH (InterPro:IPR002083); BEST
Arabidopsis thaliana protein match is: TRAF-like family
protein (TAIR:AT3G20360.1); Has 795 Blast hits to 651
proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa
- 86; Fungi - 10; Plants - 671; Viruses - 0; Other
Eukaryotes - 28 (source: NCBI BLink)."
/db_xref="TAIR:AT3G20370"
/db_xref="Araport:AT3G20370"
intron_pos 42:1 (1/5)
intron_pos 119:2 (2/5)
intron_pos 174:1 (3/5)
intron_pos 268:2 (4/5)
intron_pos 324:1 (5/5)
BEGIN
1 MASHYRNTSA IAYLLLCLFI TSATAHSFIR QITDDLKTNL QQEVGAEPIQ NLDVGHYLQE
61 NKEISSRDYK VSASNAVKGL RDRPPSSYSL KMESFNTLLK STYTEKYVSR PFSVGGYNWT
121 LVVFPNGNKK DSGSGYLSLY VAIDNSTLGQ QEIYADLRFY IFNKNERKYF TIQDTDVWKF
181 SVFKTMWGFS QVLPIDTFKD PTKGYLYDGD HCEFGVDVTM PSLYEKSELF SVTENFLNPR
241 FTWTIRGFST LLKNSYLSEV FSIGGRSWNI QINPSGLGTG EGKALSMYLG LNVNEIFRPY
301 EKIYVRAKLR ALNQLNLSNI ERELDIWYNG PGYGEYSWGF PEFIYFPYLT DSSKGFVKND
361 VLMVQVEMEA ISSTKYFPS
//