LOCUS AEE76041.1 609 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana transducin family protein / WD-40
repeat family protein protein.
ACCESSION CP002686-3368
PROTEIN_ID AEE76041.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G18060"
/inference="Similar to RNA sequence,
EST:INSD:BP567208.1,INSD:EL048691.1,INSD:EL011475.1,
INSD:AI996886.1,INSD:EH844293.1,INSD:EH858215.1,
INSD:EL337073.1,INSD:BP651416.1,INSD:BP665508.1,
INSD:BP781015.1,INSD:BP807019.1,INSD:DR224905.1,
INSD:BP858098.1,INSD:EL166825.1,INSD:EL168514.1,
INSD:BP833156.1,INSD:EH991294.1,INSD:BP656445.1,
INSD:BP788575.1,INSD:EH847455.1,INSD:EL108388.1,
INSD:BP605781.1,INSD:BP780141.1,INSD:EL196462.1,
INSD:Z26104.1,INSD:BP816927.1,INSD:BP815869.1,
INSD:BP592417.1,INSD:EH843884.1,INSD:EH987877.1,
INSD:BP790866.1,INSD:EL170108.1,INSD:ES211944.1,
INSD:BP800192.1,INSD:EG513060.1,INSD:Z25585.1,
INSD:EH972062.1,INSD:BP578581.1,INSD:DR371527.1,
INSD:BP650016.1,INSD:EL275139.1,INSD:BP666088.1,
INSD:EH842746.1,INSD:EG513061.1,INSD:BP823408.1,
INSD:EL212230.1,INSD:BP586958.1,INSD:BP610160.1,
INSD:EH831001.1,INSD:AV551848.1,INSD:ES173437.1,
INSD:BP657774.1,INSD:EL967092.1,INSD:EL985010.1,
INSD:AV791680.1,INSD:BP792227.1,INSD:BP592107.1,
INSD:AV829373.1,INSD:EL213820.1,INSD:AV825595.1,
INSD:BP565401.1,INSD:BP592073.1,INSD:EL208080.1,
INSD:EH817119.1,INSD:AV805828.1,INSD:BP645982.1,
INSD:Z18423.1,INSD:BP778331.1,INSD:EL330209.1,
INSD:EL121461.1,INSD:BP646019.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY114624.1,INSD:AY062436.1"
/note="transducin family protein / WD-40 repeat family
protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN:
biological_process unknown; LOCATED IN: CUL4 RING
ubiquitin ligase complex; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782),
WD40 repeat, conserved site (InterPro:IPR019775), WD40
repeat (InterPro:IPR001680), Nitrous oxide reductase,
N-terminal (InterPro:IPR011045), WD40
repeat-like-containing domain (InterPro:IPR011046),
WD40-repeat-containing domain (InterPro:IPR017986),
WD40/YVTN repeat-like-containing domain
(InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: nucleotide binding (TAIR:AT2G01330.2); Has 46825
Blast hits to 21434 proteins in 724 species: Archae - 58;
Bacteria - 7760; Metazoa - 18076; Fungi - 9371; Plants -
5681; Viruses - 0; Other Eukaryotes - 5879 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G18060"
/db_xref="Araport:AT3G18060"
intron_pos 130:2 (1/5)
intron_pos 184:2 (2/5)
intron_pos 247:0 (3/5)
intron_pos 389:0 (4/5)
intron_pos 525:0 (5/5)
BEGIN
1 MELSETYACV PSTERGRGIL ISGNSKSDTI LYTNGRSVVT LDLNNPLKVS IYGEHAYPAT
61 VARYSPNGEW IASGDVSGTV RIWGAYNDHV LKNEFKVLAG RIDDLQWSAD GMRIVASGDG
121 KGKSLVRAFM WDSGSNVGEF DGHSRRVLSC AIKPTRPFRI VTCGEDFLVN FYEGPPFKFK
181 LSSREHSNFV NCVRFAPDGS KFITVSSDKK GIIYDGKTCE ILGELSSDDG HKGSIYAVSW
241 SPDGKQVLTV SADKSAKIWD ISDNGSGSLN TTLNCPGSSG GVDDMLVGCL WQNDHIVTVS
301 LGGTISIFSA SDLDKSPFQF SGHMKNVSSL AVLKGNADYI LSGSYDGLIC KWMLGRGFCG
361 KLQRTQNSQI KCFAAHEEEI VTSGYDNKIS RISYKDDQCT NEESIDIGNQ PKDLSLAPLS
421 PDLLLVTFES GVVFLRDGKV VSTINLGFIV TALAVTPDGT EAVIGGQDGK LHLYSINGDS
481 LTEEAVLERH RGAISVIRYS PDLSMFASAD LNREAVVWDR VSREMKLKNM LYHSARINCL
541 AWSPNSTMVA TGSLDTCVIV YEVDKPASSR MTIKGAHLGG VYGLGFADDS HVVSSGEDAC
601 IRVWSFTPQ
//