LOCUS AEE75873.1 455 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002686-3149
PROTEIN_ID AEE75873.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G16850"
/inference="Similar to RNA sequence,
EST:INSD:BP648134.1,INSD:BP804993.1,INSD:EL984175.1,
INSD:BP600565.1,INSD:EG483175.1,INSD:BP602519.1,
INSD:AA394661.1,INSD:EG493041.1,INSD:BP618733.1,
INSD:EL047069.1,INSD:BP602230.1,INSD:ES056164.1,
INSD:EL323566.1,INSD:AV537297.1,INSD:EH960806.1,
INSD:ES025108.1,INSD:BP637844.1,INSD:BP619052.1,
INSD:EH900945.1,INSD:DR221294.1,INSD:BP656097.1,
INSD:EH934569.1,INSD:EL228185.1,INSD:EL165478.1,
INSD:EL134776.1,INSD:AV551225.1,INSD:DR221289.1,
INSD:EL098440.1,INSD:EL337773.1,INSD:BX835371.1,
INSD:EL238529.1,INSD:EH909286.1,INSD:BP670294.1,
INSD:BP596782.1,INSD:BP652296.1,INSD:BP597852.1,
INSD:BP603565.1,INSD:EL327585.1,INSD:DR221295.1,
INSD:DR221304.1,INSD:DR221291.1,INSD:EL986478.1,
INSD:BP599302.1,INSD:AV554468.1,INSD:DR221301.1,
INSD:DR363800.1,INSD:EH817093.1,INSD:ES097359.1,
INSD:AV798635.1,INSD:BP659607.1,INSD:EL247432.1,
INSD:EL127569.1,INSD:EL034294.1,INSD:EH898281.1,
INSD:BP615948.1,INSD:EL140473.1,INSD:EL240800.1,
INSD:EL985819.1,INSD:AV552995.1,INSD:BP607624.1,
INSD:ES041021.1,INSD:DR221299.1,INSD:EH809701.1,
INSD:BP840719.1,INSD:EL220589.1,INSD:EH848408.1,
INSD:EL240009.1,INSD:BP642754.1,INSD:BP611083.1,
INSD:BP587987.1,INSD:BP567535.1,INSD:BP630083.1,
INSD:DR221288.1,INSD:BP601741.1,INSD:EH951394.1,
INSD:BP853404.1,INSD:DR221302.1,INSD:EL027701.1,
INSD:BP828992.1,INSD:CB258807.1,INSD:AA395163.1,
INSD:BP586766.1,INSD:BP610578.1,INSD:EH796472.1,
INSD:BX838973.1,INSD:EG483164.1,INSD:R30471.1,
INSD:BP563881.1,INSD:BP606434.1,INSD:BP599257.1,
INSD:EL215686.1,INSD:EH896639.1,INSD:U74135.1,
INSD:BP567538.1,INSD:AI994534.1,INSD:BP615283.1,
INSD:T42779.1,INSD:AV787277.1,INSD:EL163438.1,
INSD:EL264157.1,INSD:EG483186.1,INSD:DR372675.1,
INSD:ES078216.1,INSD:BP619680.1,INSD:ES026425.1,
INSD:EG504182.1,INSD:BX837531.1,INSD:EL032975.1,
INSD:BP663479.1,INSD:EL325595.1,INSD:ES159011.1,
INSD:ES215882.1,INSD:ES214578.1,INSD:EG483197.1,
INSD:BP606012.1,INSD:EH981746.1,INSD:EL276935.1,
INSD:EL998977.1,INSD:EG504183.1,INSD:DR221297.1,
INSD:EG492974.1,INSD:BP654602.1,INSD:DR221293.1,
INSD:EL047200.1,INSD:BP617537.1,INSD:ES001379.1,
INSD:BP827707.1,INSD:EL139370.1,INSD:EL316921.1,
INSD:BP613584.1,INSD:DR221303.1,INSD:EH946680.1,
INSD:BP568180.1,INSD:BP603686.1,INSD:BP669060.1,
INSD:DR221287.1,INSD:AV545651.1,INSD:EL152176.1,
INSD:BP630107.1,INSD:BP613645.1,INSD:EL283449.1,
INSD:AV538877.1,INSD:BP612679.1,INSD:AV799481.1,
INSD:EH839935.1,INSD:DR221296.1,INSD:BP857100.1,
INSD:EL161446.1,INSD:EH829764.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX823519.1,INSD:BX824720.1,INSD:AY085702.1,
INSD:AY035074.1,INSD:BX824082.1"
/note="Pectin lyase-like superfamily protein; FUNCTIONS
IN: polygalacturonase activity; INVOLVED IN: carbohydrate
metabolic process; LOCATED IN: vacuole, plant-type cell
wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase
fold/virulence factor (InterPro:IPR011050), Glycoside
hydrolase, family 28 (InterPro:IPR000743), Pectin lyase
fold (InterPro:IPR012334), Parallel beta-helix repeat
(InterPro:IPR006626); BEST Arabidopsis thaliana protein
match is: Pectin lyase-like superfamily protein
(TAIR:AT3G06770.2); Has 3152 Blast hits to 3138 proteins
in 427 species: Archae - 6; Bacteria - 1355; Metazoa - 8;
Fungi - 358; Plants - 1330; Viruses - 0; Other Eukaryotes
- 95 (source: NCBI BLink)."
/db_xref="TAIR:AT3G16850"
/db_xref="Araport:AT3G16850"
intron_pos 5:0 (1/4)
intron_pos 110:0 (2/4)
intron_pos 150:1 (3/4)
intron_pos 232:1 (4/4)
BEGIN
1 MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ
61 NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE KGATILASPD PSHWDVVSPL
121 PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE
181 FVSSKHILIS NLTFLNAPAI NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE
241 DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT
301 VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA
361 LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH LQTRSEESWI CSNVSGFSDD
421 VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW
//