LOCUS AEE75873.1 455 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein. ACCESSION CP002686-3149 PROTEIN_ID AEE75873.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /locus_tag="AT3G16850" /inference="Similar to RNA sequence, EST:INSD:BP648134.1,INSD:BP804993.1,INSD:EL984175.1, INSD:BP600565.1,INSD:EG483175.1,INSD:BP602519.1, INSD:AA394661.1,INSD:EG493041.1,INSD:BP618733.1, INSD:EL047069.1,INSD:BP602230.1,INSD:ES056164.1, INSD:EL323566.1,INSD:AV537297.1,INSD:EH960806.1, INSD:ES025108.1,INSD:BP637844.1,INSD:BP619052.1, INSD:EH900945.1,INSD:DR221294.1,INSD:BP656097.1, INSD:EH934569.1,INSD:EL228185.1,INSD:EL165478.1, INSD:EL134776.1,INSD:AV551225.1,INSD:DR221289.1, INSD:EL098440.1,INSD:EL337773.1,INSD:BX835371.1, INSD:EL238529.1,INSD:EH909286.1,INSD:BP670294.1, INSD:BP596782.1,INSD:BP652296.1,INSD:BP597852.1, INSD:BP603565.1,INSD:EL327585.1,INSD:DR221295.1, INSD:DR221304.1,INSD:DR221291.1,INSD:EL986478.1, INSD:BP599302.1,INSD:AV554468.1,INSD:DR221301.1, INSD:DR363800.1,INSD:EH817093.1,INSD:ES097359.1, INSD:AV798635.1,INSD:BP659607.1,INSD:EL247432.1, INSD:EL127569.1,INSD:EL034294.1,INSD:EH898281.1, INSD:BP615948.1,INSD:EL140473.1,INSD:EL240800.1, INSD:EL985819.1,INSD:AV552995.1,INSD:BP607624.1, INSD:ES041021.1,INSD:DR221299.1,INSD:EH809701.1, INSD:BP840719.1,INSD:EL220589.1,INSD:EH848408.1, INSD:EL240009.1,INSD:BP642754.1,INSD:BP611083.1, INSD:BP587987.1,INSD:BP567535.1,INSD:BP630083.1, INSD:DR221288.1,INSD:BP601741.1,INSD:EH951394.1, INSD:BP853404.1,INSD:DR221302.1,INSD:EL027701.1, INSD:BP828992.1,INSD:CB258807.1,INSD:AA395163.1, INSD:BP586766.1,INSD:BP610578.1,INSD:EH796472.1, INSD:BX838973.1,INSD:EG483164.1,INSD:R30471.1, INSD:BP563881.1,INSD:BP606434.1,INSD:BP599257.1, INSD:EL215686.1,INSD:EH896639.1,INSD:U74135.1, INSD:BP567538.1,INSD:AI994534.1,INSD:BP615283.1, INSD:T42779.1,INSD:AV787277.1,INSD:EL163438.1, INSD:EL264157.1,INSD:EG483186.1,INSD:DR372675.1, INSD:ES078216.1,INSD:BP619680.1,INSD:ES026425.1, INSD:EG504182.1,INSD:BX837531.1,INSD:EL032975.1, INSD:BP663479.1,INSD:EL325595.1,INSD:ES159011.1, INSD:ES215882.1,INSD:ES214578.1,INSD:EG483197.1, INSD:BP606012.1,INSD:EH981746.1,INSD:EL276935.1, INSD:EL998977.1,INSD:EG504183.1,INSD:DR221297.1, INSD:EG492974.1,INSD:BP654602.1,INSD:DR221293.1, INSD:EL047200.1,INSD:BP617537.1,INSD:ES001379.1, INSD:BP827707.1,INSD:EL139370.1,INSD:EL316921.1, INSD:BP613584.1,INSD:DR221303.1,INSD:EH946680.1, INSD:BP568180.1,INSD:BP603686.1,INSD:BP669060.1, INSD:DR221287.1,INSD:AV545651.1,INSD:EL152176.1, INSD:BP630107.1,INSD:BP613645.1,INSD:EL283449.1, INSD:AV538877.1,INSD:BP612679.1,INSD:AV799481.1, INSD:EH839935.1,INSD:DR221296.1,INSD:BP857100.1, INSD:EL161446.1,INSD:EH829764.1" /inference="Similar to RNA sequence, mRNA:INSD:BX823519.1,INSD:BX824720.1,INSD:AY085702.1, INSD:AY035074.1,INSD:BX824082.1" /note="Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G06770.2); Has 3152 Blast hits to 3138 proteins in 427 species: Archae - 6; Bacteria - 1355; Metazoa - 8; Fungi - 358; Plants - 1330; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink)." /db_xref="TAIR:AT3G16850" /db_xref="Araport:AT3G16850" intron_pos 5:0 (1/4) intron_pos 110:0 (2/4) intron_pos 150:1 (3/4) intron_pos 232:1 (4/4) BEGIN 1 MKMPVALVWL LAFTILLISG EGNNAICKEN FKLDPRPHSV SILEFGAVGD GKTLNTIAFQ 61 NAVFYLKSFA DKGGAQLYVP PGKWLTGSFN LTSHLTLFLE KGATILASPD PSHWDVVSPL 121 PSYGRGIELP GKRYRSLING DNLIDVVITG ENGTFDGQGA AWWEWLESGS LNYSRPHIIE 181 FVSSKHILIS NLTFLNAPAI NIHPVYCSQI HIRKVLIETS VDSPHVLGVA PDSSDNVCIE 241 DSTINVGHDA VSLKSGWDQY GIHYGRPTTA VHIRNLRLKS PTGAGISFGS EMSGGVSDVT 301 VERLNIHSSL IGVAFRTTRG RGGYIRNITI SDVDLTSVDT AIVANGHTGS HPDDKFDRDA 361 LPVVTHIVMR NFTGVDIGVA GNLTGIGESP FTSICLADIH LQTRSEESWI CSNVSGFSDD 421 VSPEPCQELM SSPSSCFAGG SIYEGDATAQ SYYSW //