LOCUS AEE74274.1 883 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box protein protein.
ACCESSION CP002686-936
PROTEIN_ID AEE74274.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G05670"
/gene_synonym="F18C1.6"
/gene_synonym="F18C1_6"
/inference="Similar to RNA sequence,
EST:INSD:AV792363.1,INSD:AV795103.1,INSD:EL243226.1,
INSD:EH829053.1,INSD:EG488638.1,INSD:EL286087.1,
INSD:ES069016.1,INSD:AI992827.1,INSD:BP605733.1,
INSD:ES125116.1,INSD:EG488639.1,INSD:T20674.1,
INSD:BX837178.1,INSD:EL086380.1,INSD:AV548049.1,
INSD:EH815902.1,INSD:ES048386.1,INSD:ES154319.1,
INSD:ES049463.1,INSD:ES048904.1,INSD:AI100470.1,
INSD:ES030364.1,INSD:R90668.1,INSD:EL268008.1,
INSD:BP617290.1,INSD:ES030349.1,INSD:BP781732.1,
INSD:EH826307.1,INSD:BP810481.1,INSD:AV543667.1,
INSD:EL000296.1,INSD:ES213022.1,INSD:ES077741.1,
INSD:EL298555.1,INSD:ES011358.1,INSD:AV825775.1,
INSD:EL985183.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY120751.1,INSD:BT002568.1"
/note="RING/U-box protein; FUNCTIONS IN: DNA binding, zinc
ion binding; INVOLVED IN: regulation of transcription,
DNA-dependent; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, RING-type, conserved site
(InterPro:IPR017907), Zinc finger, RING-type
(InterPro:IPR001841), Zinc finger, PHD-type
(InterPro:IPR001965), Zinc finger, FYVE/PHD-type
(InterPro:IPR011011), Zinc finger, PHD-finger
(InterPro:IPR019787); BEST Arabidopsis thaliana protein
match is: zinc finger (C3HC4-type RING finger) family
protein / BRCT domain-containing protein
(TAIR:AT1G67180.1); Has 32410 Blast hits to 21304 proteins
in 1066 species: Archae - 126; Bacteria - 4266; Metazoa -
11275; Fungi - 4969; Plants - 2419; Viruses - 550; Other
Eukaryotes - 8805 (source: NCBI BLink)."
/db_xref="TAIR:AT3G05670"
/db_xref="Araport:AT3G05670"
intron_pos 486:0 (1/2)
intron_pos 793:1 (2/2)
BEGIN
1 MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG
61 FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI TGCKSRKTNQ VVVSDNEDVD
121 LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE
181 ERDVENVDSN SLHDGEDGKM ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS
241 LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301 VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI
361 REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK VELVKRDVIK NVCGICLSEE
421 DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV
481 PERDQVYQPT EEELRSYLDP YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP
541 EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601 NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD
661 GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN SLISAHDPEL LSPKLDEFGS
721 EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK
781 AHLKNLSSQN DLGQTTFDEI STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS
841 SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
//