LOCUS AEE74183.1 753 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Transducin/WD40 repeat-like superfamily
protein protein.
ACCESSION CP002686-816
PROTEIN_ID AEE74183.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="LRS1"
/locus_tag="AT3G05090"
/gene_synonym="LATERAL ROOT STIMULATOR 1"
/gene_synonym="T12H1.5"
/gene_synonym="T12H1_5"
/inference="Similar to RNA sequence,
EST:INSD:EH795511.1,INSD:EL150377.1,INSD:EH859728.1,
INSD:BP599540.1,INSD:EG449899.1,INSD:ES021191.1,
INSD:ES154756.1,INSD:DR359442.1,INSD:AV439944.1,
INSD:EG449895.1,INSD:ES014116.1,INSD:BX840391.1,
INSD:EL132961.1,INSD:EH917231.1,INSD:AV825548.1,
INSD:BP614147.1,INSD:EL147862.1,INSD:EG491679.1,
INSD:ES121497.1,INSD:EL998207.1,INSD:EG526619.1,
INSD:BP562131.2,INSD:ES176520.1,INSD:EH802332.1,
INSD:EG491703.1,INSD:EH875604.1,INSD:EH814609.1,
INSD:EH881364.1,INSD:EL159104.1,INSD:EG491704.1,
INSD:EH956951.1,INSD:AV830668.1,INSD:ES053544.1,
INSD:EL078374.1,INSD:EG449896.1,INSD:EL229046.1,
INSD:EL997631.1,INSD:CB185764.2,INSD:EG449898.1,
INSD:ES048270.1,INSD:EH873487.1,INSD:ES059840.1,
INSD:EL084192.1,INSD:AV441895.1,INSD:ES066778.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY142674.1,INSD:AY056292.1,INSD:BT000631.1"
/note="LATERAL ROOT STIMULATOR 1 (LRS1); FUNCTIONS IN:
nucleotide binding; INVOLVED IN: lateral root formation;
LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2
(InterPro:IPR019782), Protein of unknown function DUF3337
(InterPro:IPR021772), WD40 repeat, conserved site
(InterPro:IPR019775), WD40 repeat (InterPro:IPR001680),
G-protein beta WD-40 repeat, region (InterPro:IPR020472),
WD40 repeat-like-containing domain (InterPro:IPR011046),
WD40-repeat-containing domain (InterPro:IPR017986),
WD40/YVTN repeat-like-containing domain
(InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: Coatomer, alpha subunit (TAIR:AT1G62020.1); Has
59803 Blast hits to 26869 proteins in 729 species: Archae
- 50; Bacteria - 7042; Metazoa - 23770; Fungi - 14096;
Plants - 7202; Viruses - 3; Other Eukaryotes - 7640
(source: NCBI BLink)."
/db_xref="TAIR:AT3G05090"
/db_xref="Araport:AT3G05090"
intron_pos 34:0 (1/16)
intron_pos 87:0 (2/16)
intron_pos 109:0 (3/16)
intron_pos 139:0 (4/16)
intron_pos 236:0 (5/16)
intron_pos 268:2 (6/16)
intron_pos 280:2 (7/16)
intron_pos 321:0 (8/16)
intron_pos 400:0 (9/16)
intron_pos 432:0 (10/16)
intron_pos 454:0 (11/16)
intron_pos 467:0 (12/16)
intron_pos 512:0 (13/16)
intron_pos 629:2 (14/16)
intron_pos 661:0 (15/16)
intron_pos 722:0 (16/16)
BEGIN
1 MHRVGSAGSN GGSVRTRKEK KLTYVLNDAN DTKHCAGINC LDVLKSSVSN DQSYLFTGSR
61 DGTLKRWAFD EDATFCSATF ESHVDWVNDA ALAGESTLVS CSSDTTVKTW DGLSDGVCTR
121 TLRQHSDYVT CLAVAAKNNN VVASGGLGGE VFIWDIEAAL SPVTKPNDAN EDSSSNGANG
181 PVTSLRTVGS SNNISVQSSP SHGYTPTIAK GHKESVYALA MNDTGTMLVS GGTEKVLRVW
241 DPRTGSKSMK LRGHTDNVRV LLLDSTGRFC LSGSSDSMIR LWDLGQQRCL HTYAVHTDSV
301 WALACNPSFS HVYSGGRDQC LYLTDLATRE SVLLCTKEHP IQQLALQDNS IWVATTDSSV
361 ERWPAEVQSP KTVFQRGGSF LAGNLSFNRA RVSLEGLNPA PAYKEPSITV PGTHPIVQHE
421 ILNNKRQILT KDAAGSVKLW DITRGVVVED YGKISFEEKK EELFEMVSIP SWFTVDTRLG
481 CLSVHLETPQ CFSAEMYSAD LKVSGRPEDD KINLARETLK GLLGHWLAKK KHKPKPQVLA
541 SGDTLSVKDT KKNLSASKTE ESSAASDPVY PPFEFSSVSP PSIITEGSQG GPWRKKITEF
601 TGTEDEKDFP LWCLDAVLNN RLPPRENTKL SFFLHPCEGS SVQVVTLGKL SAPRILRVHK
661 VTNYVVEKMV LDNPLDSLAI DAASVSGGQP QPLFSGNGLL QSGLKPWQKL RPSIEILCNS
721 QVLSPDMSLA TVRAYVWKKP EDLILNYRVA IAR
//