LOCUS AEE73974.1 922 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana polyribonucleotide nucleotidyltransferase
protein.
ACCESSION CP002686-540
PROTEIN_ID AEE73974.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RIF10"
/locus_tag="AT3G03710"
/gene_synonym="F20H23.26"
/gene_synonym="PDE326"
/gene_synonym="PIGMENT DEFECTIVE 326"
/gene_synonym="PNP"
/gene_synonym="POLYNUCLEOTIDE PHOSPHORYLASE"
/gene_synonym="resistant to inhibition with FSM 10"
/inference="Similar to RNA sequence,
EST:INSD:AV528052.1,INSD:AV555671.1,INSD:AV520482.1,
INSD:EL286789.1,INSD:ES122550.1,INSD:EH843853.1,
INSD:ES070682.1,INSD:ES039289.1,INSD:ES077362.1,
INSD:AI996796.1,INSD:ES169965.1,INSD:ES042585.1,
INSD:EL162857.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF450480.1,INSD:AJ252123.1"
/note="resistant to inhibition with FSM 10 (RIF10);
FUNCTIONS IN: polyribonucleotide nucleotidyltransferase
activity, 3'-5'-exoribonuclease activity, RNA binding,
nucleic acid binding; INVOLVED IN: chlorophyll
biosynthetic process, cellular response to phosphate
starvation, xanthophyll biosynthetic process, carotene
biosynthetic process, negative regulation of isopentenyl
diphosphate biosynthetic process, mevalonate-independent
pathway; LOCATED IN: chloroplast stroma, chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: K Homology,
type 1, subgroup (InterPro:IPR018111), Nucleic
acid-binding, OB-fold (InterPro:IPR012340),
Exoribonuclease, phosphorolytic domain 2
(InterPro:IPR015847), Ribosomal protein S1, RNA-binding
domain (InterPro:IPR003029), Polynucleotide phosphorylase,
phosphorolytic RNA-binding, bacterial/organelle-type
(InterPro:IPR015848), K Homology (InterPro:IPR004087),
Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), K
Homology, type 1 (InterPro:IPR004088), Exoribonuclease,
phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal
protein S5 domain 2-type fold (InterPro:IPR020568),
Polyribonucleotide nucleotidyltransferase
(InterPro:IPR012162); BEST Arabidopsis thaliana protein
match is: polyribonucleotide nucleotidyltransferase,
putative (TAIR:AT5G14580.1); Has 29137 Blast hits to 25785
proteins in 2865 species: Archae - 377; Bacteria - 19207;
Metazoa - 333; Fungi - 67; Plants - 272; Viruses - 0;
Other Eukaryotes - 8881 (source: NCBI BLink)."
/db_xref="TAIR:AT3G03710"
/db_xref="Araport:AT3G03710"
intron_pos 99:0 (1/22)
intron_pos 122:0 (2/22)
intron_pos 157:2 (3/22)
intron_pos 172:0 (4/22)
intron_pos 200:0 (5/22)
intron_pos 221:2 (6/22)
intron_pos 274:0 (7/22)
intron_pos 293:0 (8/22)
intron_pos 331:0 (9/22)
intron_pos 419:0 (10/22)
intron_pos 444:0 (11/22)
intron_pos 482:0 (12/22)
intron_pos 513:0 (13/22)
intron_pos 572:2 (14/22)
intron_pos 634:0 (15/22)
intron_pos 650:0 (16/22)
intron_pos 674:1 (17/22)
intron_pos 699:0 (18/22)
intron_pos 735:0 (19/22)
intron_pos 766:2 (20/22)
intron_pos 806:0 (21/22)
intron_pos 820:0 (22/22)
BEGIN
1 MLTSPSNALH SSTPQFWPLR RSKLCRSRNF PRFHSGERSS GGGGKLCSLS LLSGSGAGKF
61 SVRALVRPDD TDDADSVGDG SLAFPNHVSV KIPFGNREIL VETGLMGRQA SSAVTVTDGE
121 TIVYTSVCLA DVPSEPSDFL PLYVHYQERF SAVGRTSGGF FKREGRTKDH EVLICRLIDR
181 PLRPTMPKGF YNETQILSWV LSYDGLHAPD ALAVTSAGIA VALSEVPNAK AIAGVRVGLI
241 GGEFIVNPTV KEMEESQLDL FLAGTDTAIL TIEGYSNFLP EEMLLQAVKV GQDAVQATCI
301 AIEVLAKKYG KPKMLDAIRL PPPELYKHVK ELAGEELTKA LQIKSKISRR KAISSLEEKV
361 LTILTEKGYV IDEVAFGTIE AQPDLLEDED EDEEVVPEGE VDQGDVHIRP IPRKPIPLLF
421 SEVDVKLVFK EVSSKLLRRR IVEGGKRSDG RTLDEIRPIN SRCGLLPRAH GSTLFTRGET
481 QALAVVTLGD KQMAQRIDNL EGSDEYKRFY LQYTFPPSSV GEVGRIGAPS RREIGHGTLA
541 ERALETILPS DDDFPYTIRV ESTVIESNGS SSMASVCGGC LALQDAGVPV KCSVAGIAMG
601 MVWDTEEFGG DGSPLILSDI TGAEDASGDM DFKVAGNEDG VTAFQMDIKV GGITLEIMEK
661 ALIQAKAGRR HILAEMAKCS PPPTLSLSKY APLILIMKVH PSKVYSLIGS GGKKVKSIIE
721 ESGVEAIDMQ DDGTVKIMAI DVASLERAKA IISGLTMVPS VGDIYRNCEI KSMAPYGAFV
781 EIAPGREGLC HISELSAEWL AKPEDAYKVG DRIDVKLIEV NEKGQLRLSV RALLPESETD
841 KDSQKQQPAG DSTKDKSSQR KYVNTSSKDR AAAGASKVSS GDELVLKKKD VRRATGGSSD
901 KTMNSNSSTN EESLVNGEAT IS
//