LOCUS AEE73974.1 922 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana polyribonucleotide nucleotidyltransferase protein. ACCESSION CP002686-540 PROTEIN_ID AEE73974.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /gene="RIF10" /locus_tag="AT3G03710" /gene_synonym="F20H23.26" /gene_synonym="PDE326" /gene_synonym="PIGMENT DEFECTIVE 326" /gene_synonym="PNP" /gene_synonym="POLYNUCLEOTIDE PHOSPHORYLASE" /gene_synonym="resistant to inhibition with FSM 10" /inference="Similar to RNA sequence, EST:INSD:AV528052.1,INSD:AV555671.1,INSD:AV520482.1, INSD:EL286789.1,INSD:ES122550.1,INSD:EH843853.1, INSD:ES070682.1,INSD:ES039289.1,INSD:ES077362.1, INSD:AI996796.1,INSD:ES169965.1,INSD:ES042585.1, INSD:EL162857.1" /inference="Similar to RNA sequence, mRNA:INSD:AF450480.1,INSD:AJ252123.1" /note="resistant to inhibition with FSM 10 (RIF10); FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: chlorophyll biosynthetic process, cellular response to phosphate starvation, xanthophyll biosynthetic process, carotene biosynthetic process, negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), K Homology, type 1 (InterPro:IPR004088), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT5G14580.1); Has 29137 Blast hits to 25785 proteins in 2865 species: Archae - 377; Bacteria - 19207; Metazoa - 333; Fungi - 67; Plants - 272; Viruses - 0; Other Eukaryotes - 8881 (source: NCBI BLink)." /db_xref="TAIR:AT3G03710" /db_xref="Araport:AT3G03710" intron_pos 99:0 (1/22) intron_pos 122:0 (2/22) intron_pos 157:2 (3/22) intron_pos 172:0 (4/22) intron_pos 200:0 (5/22) intron_pos 221:2 (6/22) intron_pos 274:0 (7/22) intron_pos 293:0 (8/22) intron_pos 331:0 (9/22) intron_pos 419:0 (10/22) intron_pos 444:0 (11/22) intron_pos 482:0 (12/22) intron_pos 513:0 (13/22) intron_pos 572:2 (14/22) intron_pos 634:0 (15/22) intron_pos 650:0 (16/22) intron_pos 674:1 (17/22) intron_pos 699:0 (18/22) intron_pos 735:0 (19/22) intron_pos 766:2 (20/22) intron_pos 806:0 (21/22) intron_pos 820:0 (22/22) BEGIN 1 MLTSPSNALH SSTPQFWPLR RSKLCRSRNF PRFHSGERSS GGGGKLCSLS LLSGSGAGKF 61 SVRALVRPDD TDDADSVGDG SLAFPNHVSV KIPFGNREIL VETGLMGRQA SSAVTVTDGE 121 TIVYTSVCLA DVPSEPSDFL PLYVHYQERF SAVGRTSGGF FKREGRTKDH EVLICRLIDR 181 PLRPTMPKGF YNETQILSWV LSYDGLHAPD ALAVTSAGIA VALSEVPNAK AIAGVRVGLI 241 GGEFIVNPTV KEMEESQLDL FLAGTDTAIL TIEGYSNFLP EEMLLQAVKV GQDAVQATCI 301 AIEVLAKKYG KPKMLDAIRL PPPELYKHVK ELAGEELTKA LQIKSKISRR KAISSLEEKV 361 LTILTEKGYV IDEVAFGTIE AQPDLLEDED EDEEVVPEGE VDQGDVHIRP IPRKPIPLLF 421 SEVDVKLVFK EVSSKLLRRR IVEGGKRSDG RTLDEIRPIN SRCGLLPRAH GSTLFTRGET 481 QALAVVTLGD KQMAQRIDNL EGSDEYKRFY LQYTFPPSSV GEVGRIGAPS RREIGHGTLA 541 ERALETILPS DDDFPYTIRV ESTVIESNGS SSMASVCGGC LALQDAGVPV KCSVAGIAMG 601 MVWDTEEFGG DGSPLILSDI TGAEDASGDM DFKVAGNEDG VTAFQMDIKV GGITLEIMEK 661 ALIQAKAGRR HILAEMAKCS PPPTLSLSKY APLILIMKVH PSKVYSLIGS GGKKVKSIIE 721 ESGVEAIDMQ DDGTVKIMAI DVASLERAKA IISGLTMVPS VGDIYRNCEI KSMAPYGAFV 781 EIAPGREGLC HISELSAEWL AKPEDAYKVG DRIDVKLIEV NEKGQLRLSV RALLPESETD 841 KDSQKQQPAG DSTKDKSSQR KYVNTSSKDR AAAGASKVSS GDELVLKKKD VRRATGGSSD 901 KTMNSNSSTN EESLVNGEAT IS //