LOCUS AEE73754.1 823 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DEAD/DEAH box helicase protein.
ACCESSION CP002686-229
PROTEIN_ID AEE73754.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G02060"
/gene_synonym="F1C9.16"
/gene_synonym="F1C9_16"
/inference="Similar to RNA sequence,
EST:INSD:BP867364.1,INSD:ES190671.1,INSD:AV528270.1,
INSD:ES116402.1,INSD:ES023330.1,INSD:AV832208.1,
INSD:DR363211.1,INSD:EL125013.1,INSD:EL986191.1,
INSD:AV522754.1,INSD:AV818396.1,INSD:ES039970.1,
INSD:EL270192.1,INSD:AV529768.1,INSD:DR363210.1,
INSD:BP790021.1,INSD:DR363212.1,INSD:EL999356.1,
INSD:ES154428.1,INSD:EH988456.1,INSD:AV523977.1,
INSD:ES180620.1,INSD:AV819655.1,INSD:EL257757.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT002188.1,INSD:AF370520.1"
/note="DEAD/DEAH box helicase, putative; FUNCTIONS IN: in
6 functions; INVOLVED IN: DNA repair, regulation of
transcription, DNA-dependent; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s:
Transcription-repair-coupling factor (InterPro:IPR005118),
DNA/RNA helicase, DEAD/DEAH box type, N-terminal
(InterPro:IPR011545), Transcription factor CarD
(InterPro:IPR003711), DEAD-like helicase, N-terminal
(InterPro:IPR014001), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
thaliana protein match is: DEAD/DEAH box RNA helicase
family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to
30948 proteins in 2896 species: Archae - 262; Bacteria -
19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses
- 13; Other Eukaryotes - 7844 (source: NCBI BLink)."
/db_xref="TAIR:AT3G02060"
/db_xref="Araport:AT3G02060"
intron_pos 201:2 (1/12)
intron_pos 277:0 (2/12)
intron_pos 359:0 (3/12)
intron_pos 404:0 (4/12)
intron_pos 445:2 (5/12)
intron_pos 492:1 (6/12)
intron_pos 516:0 (7/12)
intron_pos 570:0 (8/12)
intron_pos 599:0 (9/12)
intron_pos 657:0 (10/12)
intron_pos 672:0 (11/12)
intron_pos 791:0 (12/12)
BEGIN
1 MMSLLPNPDP ITVPLVLKLC SFPPPRRLFS LRLRRFTRKS SSLLPLVAVS SLSATAAKPT
61 RWREKPELAE SDSISLLNER IRRDLGKRET ARPAMDSEEA EKYIHMVKEQ QERGLQKLKG
121 IRQGTKAAGD GAFSYKVDPY SLLSGDYVVH KKVGIGRFVG IKFDVPKDSS EPLEYVFIEY
181 ADGMAKLPLK QASRLLYRYN LPNETKRPRT LSRLSDTSVW ERRKTKGKVA IQKMVVDLME
241 LYLHRLRQKR YPYPKNPIMA DFAAQFPYNA TPDQKQAFLD VEKDLTERET PMDRLICGDV
301 GFGKTEVALR AIFCVVSTGK QAMVLAPTIV LAKQHYDVIS ERFSLYPHIK VGLLSRFQTK
361 AEKEEYLEMI KTGHLNIIVG THSLLGSRVV YSNLGLLVVD EEQRFGVKQK EKIASFKTSV
421 DVLTLSATPI PRTLYLALTG FRDASLISTP PPERIPIKTH LSSFRKEKVI EAIKNELDRG
481 GQVFYVLPRI KGLEEVMDFL EEAFPDIDIA MAHGKQYSKQ LEETMERFAQ GKIKILICTN
541 IVESGLDIQN ANTIIIQDVQ QFGLAQLYQL RGRVGRADKE AHAYLFYPDK SLLSDQALER
601 LSALEECREL GQGFQLAEKD MGIRGFGTIF GEQQTGDVGN VGIDLFFEML FESLSKVEEL
661 RIFSVPYDLV KIDININPRL PSEYVNYLEN PMEIIHEAEK AAEKDMWSLM QFTENLRRQY
721 GKEPYSMEII LKKLYVRRMA ADLGVNRIYA SGKMVVMKTN MSKKVFKLIT DSMTCDVYRS
781 SLIYEGDQIM AELLLELPRE QLLNWMFQCL SELHASLPAL IKY
//