LOCUS AEE73754.1 823 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana DEAD/DEAH box helicase protein. ACCESSION CP002686-229 PROTEIN_ID AEE73754.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /locus_tag="AT3G02060" /gene_synonym="F1C9.16" /gene_synonym="F1C9_16" /inference="Similar to RNA sequence, EST:INSD:BP867364.1,INSD:ES190671.1,INSD:AV528270.1, INSD:ES116402.1,INSD:ES023330.1,INSD:AV832208.1, INSD:DR363211.1,INSD:EL125013.1,INSD:EL986191.1, INSD:AV522754.1,INSD:AV818396.1,INSD:ES039970.1, INSD:EL270192.1,INSD:AV529768.1,INSD:DR363210.1, INSD:BP790021.1,INSD:DR363212.1,INSD:EL999356.1, INSD:ES154428.1,INSD:EH988456.1,INSD:AV523977.1, INSD:ES180620.1,INSD:AV819655.1,INSD:EL257757.1" /inference="Similar to RNA sequence, mRNA:INSD:BT002188.1,INSD:AF370520.1" /note="DEAD/DEAH box helicase, putative; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription-repair-coupling factor (InterPro:IPR005118), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Transcription factor CarD (InterPro:IPR003711), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT2G01440.1); Has 31166 Blast hits to 30948 proteins in 2896 species: Archae - 262; Bacteria - 19852; Metazoa - 1558; Fungi - 988; Plants - 649; Viruses - 13; Other Eukaryotes - 7844 (source: NCBI BLink)." /db_xref="TAIR:AT3G02060" /db_xref="Araport:AT3G02060" intron_pos 201:2 (1/12) intron_pos 277:0 (2/12) intron_pos 359:0 (3/12) intron_pos 404:0 (4/12) intron_pos 445:2 (5/12) intron_pos 492:1 (6/12) intron_pos 516:0 (7/12) intron_pos 570:0 (8/12) intron_pos 599:0 (9/12) intron_pos 657:0 (10/12) intron_pos 672:0 (11/12) intron_pos 791:0 (12/12) BEGIN 1 MMSLLPNPDP ITVPLVLKLC SFPPPRRLFS LRLRRFTRKS SSLLPLVAVS SLSATAAKPT 61 RWREKPELAE SDSISLLNER IRRDLGKRET ARPAMDSEEA EKYIHMVKEQ QERGLQKLKG 121 IRQGTKAAGD GAFSYKVDPY SLLSGDYVVH KKVGIGRFVG IKFDVPKDSS EPLEYVFIEY 181 ADGMAKLPLK QASRLLYRYN LPNETKRPRT LSRLSDTSVW ERRKTKGKVA IQKMVVDLME 241 LYLHRLRQKR YPYPKNPIMA DFAAQFPYNA TPDQKQAFLD VEKDLTERET PMDRLICGDV 301 GFGKTEVALR AIFCVVSTGK QAMVLAPTIV LAKQHYDVIS ERFSLYPHIK VGLLSRFQTK 361 AEKEEYLEMI KTGHLNIIVG THSLLGSRVV YSNLGLLVVD EEQRFGVKQK EKIASFKTSV 421 DVLTLSATPI PRTLYLALTG FRDASLISTP PPERIPIKTH LSSFRKEKVI EAIKNELDRG 481 GQVFYVLPRI KGLEEVMDFL EEAFPDIDIA MAHGKQYSKQ LEETMERFAQ GKIKILICTN 541 IVESGLDIQN ANTIIIQDVQ QFGLAQLYQL RGRVGRADKE AHAYLFYPDK SLLSDQALER 601 LSALEECREL GQGFQLAEKD MGIRGFGTIF GEQQTGDVGN VGIDLFFEML FESLSKVEEL 661 RIFSVPYDLV KIDININPRL PSEYVNYLEN PMEIIHEAEK AAEKDMWSLM QFTENLRRQY 721 GKEPYSMEII LKKLYVRRMA ADLGVNRIYA SGKMVVMKTN MSKKVFKLIT DSMTCDVYRS 781 SLIYEGDQIM AELLLELPRE QLLNWMFQCL SELHASLPAL IKY //