LOCUS AEC10820.1 729 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA helicase family protein protein.
ACCESSION CP002685-7430
PROTEIN_ID AEC10820.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G47250"
/gene_synonym="T8I13.9"
/inference="Similar to RNA sequence,
EST:INSD:DR253633.1,INSD:ES186143.1,INSD:EL265169.1,
INSD:EL254019.1,INSD:DR253619.1,INSD:EL156887.1,
INSD:DR253598.1,INSD:DR253610.1,INSD:BP806511.1,
INSD:ES189738.1,INSD:DR253620.1,INSD:DR280890.1,
INSD:EH973443.1,INSD:BE525476.1,INSD:DR253603.1,
INSD:ES138771.1,INSD:EL138497.1,INSD:DR253592.1,
INSD:DR253601.1,INSD:DR253604.1,INSD:BP838656.1,
INSD:AV548639.1,INSD:DR253593.1,INSD:AV826952.1,
INSD:BP610735.1,INSD:AV546794.1,INSD:DR253611.1,
INSD:DR253616.1,INSD:ES090788.1,INSD:EL318276.1,
INSD:DR253617.1,INSD:BP867074.1,INSD:DR253621.1,
INSD:DR253594.1,INSD:DR253626.1,INSD:BP671615.1,
INSD:BP819463.1,INSD:DR253584.1,INSD:AV442394.1,
INSD:BP847181.1,INSD:DR280892.1,INSD:EL230764.1,
INSD:DR253596.1,INSD:DR253605.1,INSD:BP811467.1,
INSD:DR253625.1,INSD:DR253590.1,INSD:EL312944.1,
INSD:DR253591.1,INSD:AV796854.1,INSD:DR253615.1,
INSD:DR253630.1,INSD:DR253628.1,INSD:DR253614.1,
INSD:ES165585.1,INSD:BP807952.1,INSD:DR253595.1,
INSD:DR253600.1,INSD:DR253627.1,INSD:DR253631.1,
INSD:BP655986.1,INSD:DR253597.1,INSD:BE528658.1,
INSD:DR253634.1,INSD:DR280889.1,INSD:DR253632.1,
INSD:EL164635.1,INSD:DR253618.1,INSD:DR253602.1,
INSD:DR253624.1,INSD:DR253583.1,INSD:DR253586.1,
INSD:BP829588.1,INSD:AV811700.1,INSD:DR253613.1,
INSD:DR253585.1,INSD:DR253587.1,INSD:BP637327.1,
INSD:BP646152.1,INSD:DR253599.1,INSD:BP612808.1,
INSD:DR253608.1,INSD:DR253629.1,INSD:BP598178.1,
INSD:DR253609.1,INSD:DR253622.1,INSD:DR253606.1,
INSD:DR253588.1,INSD:DR253589.1,INSD:ES193596.1,
INSD:BP603247.1,INSD:DR253623.1,INSD:EL027141.1,
INSD:AI997433.1,INSD:DR253607.1,INSD:BP844389.1,
INSD:EH843878.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX820131.1,INSD:BT004534.1,INSD:AK226886.1,
INSD:AY128301.1"
/note="RNA helicase family protein; FUNCTIONS IN: in 7
functions; LOCATED IN: membrane, chloroplast envelope;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s:
Helicase-associated domain (InterPro:IPR007502), ATPase,
AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase,
DEAD/DEAH box type, N-terminal (InterPro:IPR011545),
Domain of unknown function DUF1605 (InterPro:IPR011709),
DEAD-like helicase, N-terminal (InterPro:IPR014001),
DNA/RNA helicase, C-terminal (InterPro:IPR001650),
Helicase, superfamily 1/2, ATP-binding domain
(InterPro:IPR014021); BEST Arabidopsis thaliana protein
match is: RNA helicase family protein (TAIR:AT3G62310.1);
Has 10530 Blast hits to 9574 proteins in 1628 species:
Archae - 0; Bacteria - 3453; Metazoa - 2465; Fungi - 1286;
Plants - 884; Viruses - 707; Other Eukaryotes - 1735
(source: NCBI BLink)."
/db_xref="Araport:AT2G47250"
/db_xref="TAIR:AT2G47250"
intron_pos 98:0 (1/6)
intron_pos 165:2 (2/6)
intron_pos 527:1 (3/6)
intron_pos 569:1 (4/6)
intron_pos 649:0 (5/6)
intron_pos 688:2 (6/6)
BEGIN
1 MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE
61 KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ FVLDAVVADN SDKGRKWLVG
121 CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP
181 LLERYKVIIL DEAHERTLAT DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL
241 MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301 KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT
361 IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR SGRAGRTRPG KCFRLYTEKS
421 FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL
481 DDEGNLTKTG EIMSEFPLDP QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA
541 ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601 RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH
661 KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS NFPNCEAKRA LEKLYKKRER
721 EKNESKNRK
//