LOCUS AEC10670.1 328 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TGF-beta receptor interacting protein
1 protein.
ACCESSION CP002685-7211
PROTEIN_ID AEC10670.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="TRIP-1"
/locus_tag="AT2G46280"
/gene_synonym="T3F17.7"
/gene_synonym="TGF-beta receptor interacting protein 1"
/gene_synonym="TIF3I1"
/gene_synonym="TRIP1"
/inference="Similar to RNA sequence,
EST:INSD:BP608406.1,INSD:ES097048.1,INSD:EG507970.1,
INSD:BP787122.1,INSD:T43639.1,INSD:ES072620.1,
INSD:DR376319.1,INSD:ES000930.1,INSD:ES103926.1,
INSD:ES198660.1,INSD:BP816025.1,INSD:BP665751.1,
INSD:EL967575.1,INSD:EL288818.1,INSD:ES213454.1,
INSD:EH917949.1,INSD:ES104997.1,INSD:EG507968.1,
INSD:BP836400.1,INSD:EL147527.1,INSD:AV519843.1,
INSD:EG525460.1,INSD:ES196091.1,INSD:EL200933.1,
INSD:BE528297.1,INSD:DR341733.1,INSD:DR338947.1,
INSD:BP626814.1,INSD:Z29843.1,INSD:ES212676.1,
INSD:Z27253.1,INSD:ES085402.1,INSD:ES024276.1,
INSD:EH862346.1,INSD:BX839213.1,INSD:EG507980.1,
INSD:ES114267.1,INSD:ES213132.1,INSD:BU635558.1,
INSD:T75627.1,INSD:BP575591.1,INSD:BP789002.1,
INSD:EH970443.1,INSD:BP793330.1,INSD:DR341727.1,
INSD:DR341730.1,INSD:N38091.1,INSD:DR338940.1,
INSD:EL991558.1,INSD:BP584207.1,INSD:ES124998.1,
INSD:EL292588.1,INSD:BP786831.1,INSD:ES092075.1,
INSD:BP635577.1,INSD:BP563630.1,INSD:AV788546.1,
INSD:BP578632.1,INSD:EL968794.1,INSD:BP578641.1,
INSD:ES068248.1,INSD:ES125442.1,INSD:ES058310.1,
INSD:AI998398.1,INSD:ES166556.1,INSD:ES009477.1,
INSD:CB258224.1,INSD:ES199902.1,INSD:ES197297.1,
INSD:AV517937.1,INSD:AV541154.1,INSD:ES046587.1,
INSD:BP576149.1,INSD:BP577453.1,INSD:EH818492.1,
INSD:BP824022.1,INSD:T13850.1,INSD:DR375321.1,
INSD:DR338951.1,INSD:AV535977.1,INSD:EH899824.1,
INSD:ES104922.1,INSD:T46040.1,INSD:H36544.1,
INSD:DR341729.1,INSD:ES072383.1,INSD:EL063884.1,
INSD:EH954487.1,INSD:ES179895.1,INSD:BP783282.1,
INSD:BP821034.1,INSD:ES127751.1,INSD:ES087895.1,
INSD:BP840984.1,INSD:ES002318.1,INSD:AV440748.1,
INSD:ES077078.1,INSD:EH833723.1,INSD:BP571398.1,
INSD:EL991813.1,INSD:BP625974.1,INSD:EL998518.1,
INSD:EG507981.1,INSD:DR338934.1,INSD:EH851066.1,
INSD:BP581863.1,INSD:DR341735.1,INSD:EL251806.1,
INSD:BP626337.1,INSD:BP582949.1,INSD:AV818882.1,
INSD:BP633315.1,INSD:ES203396.1,INSD:EL142644.1,
INSD:ES008089.1,INSD:BP779814.1,INSD:EL994666.1,
INSD:DR341734.1,INSD:ES145281.1,INSD:DR341732.1,
INSD:BP643099.1,INSD:ES090367.1,INSD:AV531345.1,
INSD:ES055958.1,INSD:EL269432.1,INSD:ES027604.1,
INSD:ES161074.1,INSD:AV532846.1,INSD:ES148773.1,
INSD:EH923267.1,INSD:EL053500.1,INSD:BP606068.1,
INSD:ES079122.1,INSD:ES003433.1,INSD:AV555771.1,
INSD:DR341731.1,INSD:EL181082.1,INSD:ES083019.1,
INSD:BP566056.1,INSD:EH823509.1,INSD:BP662552.1,
INSD:EL977379.1,INSD:DR381529.1,INSD:EL112691.1,
INSD:EH962264.1,INSD:DR341736.1,INSD:AV825831.2,
INSD:EG507969.1,INSD:AV530377.1,INSD:EG507971.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX822030.1,INSD:BX820707.1,INSD:AK226590.1,
INSD:BX820483.1,INSD:BX820839.1,INSD:AY064633.1,
INSD:BX820114.1,INSD:BX819639.1,INSD:BX820257.1,
INSD:U36765.1,INSD:BX820633.1,INSD:BX819310.1,
INSD:BX842024.1"
/note="TGF-beta receptor interacting protein 1 (TRIP-1);
FUNCTIONS IN: protein binding, nucleotide binding;
INVOLVED IN: response to cadmium ion, response to salt
stress; LOCATED IN: CUL4 RING ubiquitin ligase complex;
EXPRESSED IN: male gametophyte, guard cell, root, cultured
cell, pollen tube; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage; CONTAINS InterPro
DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat,
conserved site (InterPro:IPR019775), WD40 repeat
(InterPro:IPR001680), G-protein beta WD-40 repeat, region
(InterPro:IPR020472), WD40 repeat-like-containing domain
(InterPro:IPR011046), WD40-repeat-containing domain
(InterPro:IPR017986), WD40/YVTN repeat-like-containing
domain (InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: Transducin/WD40 repeat-like superfamily protein
(TAIR:AT2G46290.1); Has 49007 Blast hits to 22277 proteins
in 692 species: Archae - 72; Bacteria - 7331; Metazoa -
19078; Fungi - 11080; Plants - 5389; Viruses - 0; Other
Eukaryotes - 6057 (source: NCBI BLink)."
/db_xref="Araport:AT2G46280"
/db_xref="TAIR:AT2G46280"
intron_pos 62:1 (1/7)
intron_pos 134:1 (2/7)
intron_pos 179:0 (3/7)
intron_pos 219:0 (4/7)
intron_pos 249:0 (5/7)
intron_pos 278:0 (6/7)
intron_pos 304:2 (7/7)
BEGIN
1 MRPILMKGHE RPLTFLRYNR EGDLLFSCAK DHTPTLWFAD NGERLGTYRG HNGAVWCCDV
61 SRDSSRLITG SADQTAKLWD VKSGKELFTF KFNAPTRSVD FAVGDRLAVI TTDHFVDRTA
121 AIHVKRIAED PEEQDAESVL VLHCPDGKKR INRAVWGPLN QTIVSGGEDK VIRIWDAETG
181 KLLKQSDEEV GHKKDITSLC KAADDSHFLT GSLDKTAKLW DMRTLTLLKT YTTVVPVNAV
241 SLSPLLNHVV LGGGQDASAV TTTDHRAGKF EAKFYDKILQ EEIGGVKGHF GPINALAFNP
301 DGKSFSSGGE DGYVRLHHFD SDYFNIKI
//