LOCUS AEC10357.1 529 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding protein protein.
ACCESSION CP002685-6794
PROTEIN_ID AEC10357.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="LARP6b"
/locus_tag="AT2G43970"
/gene_synonym="AtLARP6b"
/gene_synonym="F6E13.10"
/gene_synonym="La related protein 6b"
/inference="Similar to RNA sequence,
EST:INSD:BP787459.1,INSD:T42611.1,INSD:EH937943.1,
INSD:BP575538.1,INSD:EL126105.1,INSD:BP614627.1,
INSD:BP599726.1,INSD:BP606885.1,INSD:EL000628.1,
INSD:BU636181.1,INSD:AV818194.1,INSD:EL333145.1,
INSD:EL341401.1,INSD:AV797530.1,INSD:BP811512.1,
INSD:BP615191.1,INSD:EG523247.1,INSD:BP575854.1,
INSD:BP583016.1,INSD:AA597727.1,INSD:EL212537.1,
INSD:EL242437.1,INSD:EL266247.1,INSD:ES001356.1,
INSD:EH848964.1,INSD:AV525463.1,INSD:BP833592.1,
INSD:BP612517.1,INSD:EH945289.1,INSD:BP866038.1,
INSD:BP865792.1,INSD:BP605779.1,INSD:EH854943.1,
INSD:AV803580.1,INSD:EH960401.1,INSD:EL312272.1,
INSD:CD533712.1,INSD:EG528259.1,INSD:EH848225.1,
INSD:EH882431.1,INSD:BP787028.1,INSD:BP848521.1,
INSD:BP603073.1,INSD:EL317797.1,INSD:AV520978.1,
INSD:BP631841.1,INSD:EG523257.1,INSD:AV826200.1,
INSD:BP621244.1,INSD:N37655.1,INSD:Z26004.1,
INSD:BP844112.1,INSD:BP784289.1,INSD:BP605742.1,
INSD:ES192770.1,INSD:EH977070.1,INSD:BP843182.1,
INSD:EH898554.1,INSD:AV537123.1,INSD:BP852676.1,
INSD:BP575384.1,INSD:EL131197.1,INSD:CF652593.1,
INSD:BP579457.1,INSD:ES005639.1,INSD:EG513487.1,
INSD:BP855067.1,INSD:EH903858.1,INSD:BP858593.1,
INSD:BP825099.1,INSD:EL329793.1,INSD:BP583184.1,
INSD:BP582081.1,INSD:ES031462.1,INSD:EH798544.1,
INSD:EL231991.1,INSD:CB256334.1,INSD:BP865022.1,
INSD:BP614680.1,INSD:ES149238.1,INSD:AV793553.1,
INSD:BP599704.1,INSD:CB257690.1,INSD:BP845386.1,
INSD:BP649272.1,INSD:BP607685.1,INSD:EL102541.1,
INSD:BP659550.1,INSD:EH925120.1,INSD:BP587272.1,
INSD:EL074018.1,INSD:BP589051.1,INSD:AV795915.1,
INSD:AV821141.1,INSD:ES109457.1,INSD:CB256332.1,
INSD:BP843590.1,INSD:EH805769.1,INSD:AV805696.1,
INSD:EL257590.1,INSD:ES147993.1,INSD:BP605642.1,
INSD:BP846560.1,INSD:EL086454.1,INSD:ES186360.1,
INSD:N97211.1,INSD:T76846.1,INSD:BP612913.1,
INSD:AV809231.1,INSD:AV540408.1,INSD:EL255869.1,
INSD:BP622283.1,INSD:BP842043.1,INSD:BP599646.1,
INSD:T76715.1,INSD:BP619220.1,INSD:ES180407.1,
INSD:BP610116.1,INSD:EH978598.1,INSD:EG486261.1,
INSD:EG434024.1,INSD:BP798932.2,INSD:ES209453.1,
INSD:EH930209.1,INSD:EL185702.1,INSD:BP794552.1,
INSD:EH914151.1,INSD:EL284807.1,INSD:EL263886.1,
INSD:EL979582.1,INSD:EH870582.1,INSD:DR263174.1,
INSD:AI994349.1,INSD:BP596291.1,INSD:EL015556.1,
INSD:BP618359.1,INSD:DR232479.1,INSD:EG430452.1,
INSD:BP583463.1,INSD:BP601262.1,INSD:EH993198.1,
INSD:BP574999.1,INSD:EH927309.1,INSD:BP671948.1,
INSD:EL293385.1,INSD:BP671075.1,INSD:EL088784.1,
INSD:N96745.1,INSD:CB256333.1,INSD:EL120283.1,
INSD:EG496244.1,INSD:EG513479.1,INSD:EL976805.1,
INSD:BP618247.1,INSD:BP566001.1,INSD:BP575949.1,
INSD:EG513480.1,INSD:DR263171.1,INSD:BP782241.1,
INSD:BP856051.1,INSD:EL217653.1,INSD:CK120321.1,
INSD:AV522392.1,INSD:BP644552.1,INSD:EL151466.1,
INSD:AV827861.1,INSD:DR370038.1,INSD:BP627855.1,
INSD:BP668902.1,INSD:AV542209.1,INSD:BP612619.1,
INSD:BP582881.1,INSD:BP635380.1,INSD:EG523255.1,
INSD:EL186808.1,INSD:BP803213.1,INSD:BP804808.1,
INSD:AV538803.1,INSD:BP800187.1,INSD:EH989744.1,
INSD:BP564651.1,INSD:BP780422.1,INSD:ES151681.1,
INSD:EH953632.1,INSD:EH830664.1,INSD:EH951539.1,
INSD:BU635153.1,INSD:EH894436.1,INSD:EL241628.1,
INSD:BP568975.1,INSD:EG525486.1,INSD:BP628490.1,
INSD:EL291471.1,INSD:BP613110.1,INSD:EG525087.1,
INSD:BP611416.1,INSD:AV527192.1,INSD:BP645812.1,
INSD:EL009303.1,INSD:EL325602.1,INSD:BP600208.1,
INSD:BP611686.1,INSD:AV805697.1,INSD:R83971.1,
INSD:BP617246.1,INSD:BP815908.1,INSD:BP853461.1,
INSD:EH971898.1,INSD:BP565700.1,INSD:BP860139.1,
INSD:EG520370.1,INSD:EH858451.1,INSD:BP861528.1,
INSD:EG528260.1,INSD:BP599333.1,INSD:AV787550.1,
INSD:EL119534.1,INSD:BP615788.1,INSD:AV552784.1,
INSD:BP855293.1,INSD:BP579060.1,INSD:EH917789.1,
INSD:AV544182.1,INSD:EL233000.1,INSD:BP634182.1,
INSD:BP575845.1,INSD:BP600437.1,INSD:AV793963.1,
INSD:BP613434.1,INSD:EH892330.1,INSD:BP600502.1,
INSD:BP817780.1,INSD:EL129473.1,INSD:BP616896.1,
INSD:EH861391.1,INSD:BP807799.1,INSD:EL228458.1,
INSD:BP793416.1,INSD:EH955591.1,INSD:BP841828.1,
INSD:EH817222.1,INSD:EL119771.1,INSD:BP787973.1,
INSD:BP666255.1,INSD:BP652835.1,INSD:BP644695.1,
INSD:BP632842.1,INSD:EL103799.1,INSD:EH859256.1,
INSD:BP782266.1,INSD:BP662583.1,INSD:EH852115.1,
INSD:ES139280.1,INSD:BP809479.1,INSD:BP617047.1,
INSD:ES103544.1,INSD:EL021501.1,INSD:BP672013.1,
INSD:BP623353.1,INSD:BP860311.1,INSD:BP592340.1,
INSD:EG520438.1,INSD:EL019264.1,INSD:AV811621.1,
INSD:BP795343.1,INSD:BP616802.1,INSD:AV831922.1,
INSD:AV544281.1,INSD:EH850869.1,INSD:EL164405.1,
INSD:BP627841.1,INSD:EH877599.1,INSD:BP621677.1,
INSD:EL111302.1,INSD:AV795891.1,INSD:BP830217.1,
INSD:BP599723.1,INSD:EH822993.1,INSD:AV520746.1,
INSD:BP619299.1,INSD:EH895826.1,INSD:AV799648.1,
INSD:BP606500.1,INSD:BP812375.1,INSD:EG513488.1,
INSD:AV808870.1,INSD:EL250227.1,INSD:BP800412.1,
INSD:EH867402.1,INSD:AV554528.1,INSD:DR263173.1,
INSD:EL079143.1,INSD:BP808046.1,INSD:EH958883.1,
INSD:AI099519.1,INSD:BP600611.1,INSD:BU636527.1,
INSD:EL071588.1,INSD:BP602205.1,INSD:AV524649.1,
INSD:BP578220.1,INSD:AV527375.1,INSD:EL184387.1,
INSD:ES034330.1,INSD:CF651878.1,INSD:AV554239.1,
INSD:BP864165.1,INSD:BP580472.1,INSD:ES096948.1,
INSD:AV551124.1,INSD:EH944478.1,INSD:AV829910.1,
INSD:EG440549.1,INSD:BU636284.1,INSD:DR263175.1,
INSD:BP630080.1,INSD:EH940817.1,INSD:EL994612.1,
INSD:EL247840.1,INSD:AV563576.1,INSD:DR263172.1,
INSD:BP630774.1,INSD:DR263170.1,INSD:DR263176.1,
INSD:BP576059.1,INSD:EL017446.1,INSD:ES153034.1,
INSD:BP858246.1,INSD:BP570768.1,INSD:EL109537.1,
INSD:AV548494.1,INSD:EL251659.1,INSD:CA963929.1,
INSD:EL172914.1,INSD:BP616745.1,INSD:EH818774.1,
INSD:EL248810.1,INSD:AV545506.1,INSD:BP597908.1,
INSD:BP803125.1,INSD:BP650764.1,INSD:BP661964.1,
INSD:BP603209.1,INSD:EH846919.1,INSD:ES134274.1,
INSD:EG486260.1,INSD:BP608075.1,INSD:BP576716.1,
INSD:BP781400.1,INSD:AV546056.1,INSD:EH837636.1,
INSD:BP781999.1,INSD:EL128504.1,INSD:EL341553.1,
INSD:AV527541.1,INSD:BP589876.1,INSD:BP632054.1,
INSD:BP843781.1,INSD:BP602524.1,INSD:ES173888.1,
INSD:EL130285.1,INSD:EL033553.1,INSD:EG523246.1,
INSD:BP623036.1,INSD:EL237369.1,INSD:AV540365.1,
INSD:BP616959.1,INSD:AV791509.1,INSD:BP787869.1,
INSD:ES180642.1,INSD:AV827210.1,INSD:BP783769.1,
INSD:BP601459.1,INSD:BP619681.1"
/inference="similar to RNA sequence, mRNA:INSD:BX821563.1"
/note="RNA-binding protein; FUNCTIONS IN: RNA binding,
nucleic acid binding; INVOLVED IN: RNA processing; LOCATED
IN: ribonucleoprotein complex, nucleus, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Winged
helix-turn-helix transcription repressor DNA-binding
(InterPro:IPR011991), RNA-binding protein Lupus La
(InterPro:IPR006630), Lupus La protein
(InterPro:IPR002344); BEST Arabidopsis thaliana protein
match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5536
Blast hits to 4258 proteins in 377 species: Archae - 4;
Bacteria - 395; Metazoa - 1833; Fungi - 479; Plants - 433;
Viruses - 20; Other Eukaryotes - 2372 (source: NCBI
BLink)."
/db_xref="Araport:AT2G43970"
/db_xref="TAIR:AT2G43970"
intron_pos 201:0 (1/8)
intron_pos 228:1 (2/8)
intron_pos 260:0 (3/8)
intron_pos 284:0 (4/8)
intron_pos 310:2 (5/8)
intron_pos 345:0 (6/8)
intron_pos 368:0 (7/8)
intron_pos 422:0 (8/8)
BEGIN
1 MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR
61 TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP IQPHLVPVQN HHPHHRFHQH
121 HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS
181 VSIDSKTGLP EDSIQKIVNQ VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK
241 AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301 LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVTELSE AGNWRSGLKV
361 RLMLKHQTKE PKQGQGRGRK GHDADVEHEE DDATTSEQQP IEKQSDDCSG EWDTHMQEQP
421 IGEDQGNEKA AGQRKGRNRG RGKGRGRGQP HQNQNQNNNH SHNQNHNHNG RGNHHHHHHH
481 QVGTQPSNNP MNNMEQPGMG KQQPPGPRMP DGTRGFSMGR GKPVMVQAE
//