LOCUS AEC10009.1 312 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana transcription factor IIB protein.
ACCESSION CP002685-6322
PROTEIN_ID AEC10009.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="TFIIB"
/locus_tag="AT2G41630"
/gene_synonym="AtTFIIB1"
/gene_synonym="T32G6.15"
/gene_synonym="T32G6_15"
/gene_synonym="TFIIB1"
/gene_synonym="transcription factor IIB"
/gene_synonym="transcription factor IIB 1"
/gene_synonym="TRANSCRIPTION FACTOR TFIIB"
/inference="Similar to RNA sequence,
EST:INSD:DR307516.1,INSD:BP591443.1,INSD:CB252208.1,
INSD:DR307518.1,INSD:BP639471.1,INSD:BP619735.1,
INSD:AV555864.1,INSD:EL295218.1,INSD:AI996903.1,
INSD:DR307519.1,INSD:BP782516.1,INSD:DR307520.1,
INSD:DR307512.1,INSD:AV790518.1,INSD:EG528027.1,
INSD:ES170806.1,INSD:BP842759.1,INSD:ES107441.1,
INSD:BP611616.1,INSD:BP805367.1,INSD:DR307509.1,
INSD:EL041572.1,INSD:BP638116.1,INSD:AV825210.1,
INSD:EL145992.1,INSD:EL256636.1,INSD:DR212423.1,
INSD:AV818654.1,INSD:ES182786.1,INSD:EL138110.1,
INSD:EH935477.1,INSD:AV564968.1,INSD:BP589411.1,
INSD:BP594166.1,INSD:EG528026.1,INSD:DR307511.1,
INSD:DR307513.1,INSD:DR307514.1,INSD:ES210157.1,
INSD:EL239025.1,INSD:EL082034.1,INSD:AV559133.1,
INSD:EH943329.1,INSD:DR307515.1,INSD:DR307517.1,
INSD:BX839300.1,INSD:BX840702.1,INSD:DR370409.1,
INSD:DR307510.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX820749.1,INSD:U31096.1,INSD:AY128769.1,
INSD:AY463600.1,INSD:BX819960.1,INSD:AY093060.1,
INSD:BX819880.1,INSD:AY086647.1"
/note="transcription factor IIB (TFIIB); FUNCTIONS IN: RNA
polymerase II transcription factor activity, transcription
regulator activity, zinc ion binding, translation
initiation factor activity; INVOLVED IN: translational
initiation, regulation of transcription, DNA-dependent,
transcription initiation, regulation of transcription;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Transcription
factor TFIIB related (InterPro:IPR000812), Cyclin-like
(InterPro:IPR011028), Transcription factor TFIIB,
cyclin-related (InterPro:IPR013150), Zinc finger,
TFIIB-type (InterPro:IPR013137), Cyclin-related
(InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST
Arabidopsis thaliana protein match is: Cyclin-like family
protein (TAIR:AT3G10330.1); Has 1967 Blast hits to 1965
proteins in 361 species: Archae - 538; Bacteria - 1;
Metazoa - 305; Fungi - 294; Plants - 195; Viruses - 14;
Other Eukaryotes - 620 (source: NCBI BLink)."
/db_xref="Araport:AT2G41630"
/db_xref="TAIR:AT2G41630"
intron_pos 118:2 (1/6)
intron_pos 127:0 (2/6)
intron_pos 170:1 (3/6)
intron_pos 214:0 (4/6)
intron_pos 243:2 (5/6)
intron_pos 269:1 (6/6)
BEGIN
1 MSDAYCTDCK KETELVVDHS AGDTLCSECG LVLESHSIDE TSEWRTFANE SSNSDPNRVG
61 GPTNPLLADS ALTTVIAKPN GSSGDFLSSS LGRWQNRNSN SDRGLIQAFK TIATMSERLG
121 LVATIKDRAN ELYKRLEDQK SSRGRNQDAL YAACLYIACR QEDKPRTIKE ICVIANGATK
181 KEIGRAKDYI VKTLGLEPGQ SVDLGTIHAG DFMRRFCSNL AMSNHAVKAA QEAVQKSEEF
241 DIRRSPISIA AVVIYIITQL SDDKKTLKDI SHATGVAEGT IRNSYKDLYP HLSKIAPSWY
301 AKEEDLKNLS SP
//